DynDom distribution version 1.5

Automated domain and hinge axis analysis from two protein conformers.

Proteins: Structure, function & genetics, 30: 144-154 (1998)

Directory,DynDom:
Files:

README      : this file
Makefile    : the Makefile
*.f         : fortran source files
DynDom.param: include file setting the array limits,etc.

Directory, Paper:
Files:

DynDomVersion1.5_FullText.pdf: Paper that describes version 1.5 in detail

Directory,Example:
Files:

run_DynDom         : C-shell script to run DynDom
adenylate.command  : Example of a command file for adenylate kinase
2eck.pdb           : PDB file for 1st conformer of adenylate kinase
4ake.pdb           : PDB file for 2nd conformer of adenylate kinase
HOWTODISPLAY       : file describing output files and how to display results      

Compilation:

Edit, if necessary, the Makefile to your system needs. 
Type: "make"

To run the example of adenylate kinase provided:

Go to "Example" directory and type, "run_DynDom"

To display the example provided:

The visualization program "RasMol" is needed to display the results.
This can be found at the internet site:

http://www.umass.edu/microbio/rasmol/rasintro.htm 

With RasMol running on your system  
simply follow the instructions in the "HOWTODISPLAY" file.

For more information go to:

http://www.sys.uea.ac.uk/~sjh/DynDom/dyndom.home.html

Bugs or questions to:

sjh@sys.uea.ac.uk

Copyright by Steven Hayward, 2002

