DNA-directed RNA polymerase II largest subuni

Protein Family Details

  Property   Value
 Name DNA-directed RNA polymerase II largest subuni
Family ID 4_m
First Chain 1r9s (A)
  No of Chains 37
  No of Clusters 7
  No of Rep. Chains 28
  No of Dimensions 6
No of Domain Movements 3

Clusters

Cluster ID Diameter (A) No of Chains Representative Members
1 0.0 1 1r5u(A) 1r5u(A) 
2 0.0 1 1i3q(A) 1i3q(A) 
3 0.0 1 2nvy(A) 2nvy(A) 
4 0.25 7 1twf(A) 1i50(A)  1k83(A)  1twa(A)  1twc(A)  1twf(A)  1twg(A)  1twh(A) 
5 0.29 2 2e2h(A) 2e2h(A)  2nvz(A) 
6 0.41 3 1y1v(A) 1pqv(A)  1y1v(A)  1y1y(A) 
7 0.98 22 Extended 1i6h(A)  1nik(A)  1nt9(A)  1r9s(A)  1r9t(A)  1sfo(A)  1wcm(A)  1y1w(A)  1y77(A)  2b63(A)  2b8k(A)  2e2i(A)  2e2j(A)  2ja5(A)  2ja6(A)  2ja7(A)  2ja7(M)  2ja8(A)  2nvq(A)  2nvs(A)  2nvt(A)  2nvx(A) 

Dimensions

Dimension ID Chain 1 Chain 2 Dyndom Run
1 (Vector: v1) 1i3q (A) 2e2h (A) true
2 (Vector: v2) 1i3q (A) 2nvy (A) true
3 (Vector: v3) 2e2h (A) 1y1v (A) true
4 (Vector: v4) 2e2h (A) 1r9s (A) false
5 (Vector: v5) 2nvy (A) 1twf (A) false
6 (Vector: v6) 1r9s (A) 2nvt (A) false

Associated Chains for 1-dimension

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
2e2h (A) DNA-directed RNA polymerase II largest subuni 1398 3.95 5 1.0v1
1i3q (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1414 3.1 2 0

Associated Chains for 2-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
2nvy (A) DNA-directed RNA polymerase II largest subuni 1419 3.4 3 1.0v2
1i3q (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1414 3.1 2 0

Associated Chains for 3-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
1y1v (A) DNA-directed RNA polymerase II largest subuni 1426 3.8 6 1.0v1 + 1.0v3
2e2h (A) DNA-directed RNA polymerase II largest subuni 1398 3.95 5 1.0v1

Associated Chains for 4-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
1nt9 (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1383 4.2 7 1.0v1 + 1.0v4
1i6h (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1381 3.3 7 1.0v1 + 1.0v4
2b8k (A) DNA-directed RNA polymerase II largest subuni 1416 4.15 7 1.01v1 + (-0.09)v2 + 0.11v3 + 0.68v4
2ja5 (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1421 3.8 7 0.98v1 + (-0.03)v2 + 0.11v3 + 0.71v4
2ja6 (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1421 4 7 0.99v1 + (-0.06)v2 + 0.12v3 + 0.73v4
2ja7 (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1421 3.8 7 0.99v1 + (-0.05)v2 + 0.11v3 + 0.72v4
2ja8 (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1421 3.8 7 0.99v1 + (-0.05)v2 + 0.1v3 + 0.71v4
2ja7 (M) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1421 3.8 7 0.99v1 + (-0.04)v2 + 0.1v3 + 0.72v4
1r5u (A) DNA-directed RNA polymerase II largest subuni 1380 4.5 1 1.0v1 + 0.03v2 + 0.26v3 + 0.51v4
2nvq (A) DNA-directed RNA polymerase II largest subuni 1405 2.9 7 0.99v1 + (-0.02)v2 + (-0.05)v3 + 0.73v4
2e2i (A) DNA-directed RNA polymerase II largest subuni 1411 3.41 7 1.01v1 + (-0.03)v2 + (-0.01)v3 + 0.69v4
2e2j (A) DNA-directed RNA polymerase II largest subuni 1395 3.5 7 1.0v1 + (-0.06)v2 + (-0.03)v3 + 0.73v4
2nvx (A) DNA-directed RNA polymerase II largest subuni 1402 3.6 7 1.01v1 + (-0.07)v2 + (-0.07)v3 + 0.68v4
1r9t (A) DNA-directed RNA polymerase II largest subuni 1395 3.5 7 0.99v1 + (-0.02)v2 + (-0.07)v3 + 0.87v4
1sfo (A) DNA-directed RNA polymerase II largest subuni 1395 3.61 7 1.0v1 + (-0.08)v2 + (-0.05)v3 + 0.87v4
1y1w (A) DNA-directed RNA polymerase II largest subuni 1416 4 7 0.99v1 + (-0.07)v2 + 0.14v3 + 0.71v4
1wcm (A) DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNI 1416 3.8 7 1.0v1 + (-0.1)v2 + 0.12v3 + 0.73v4
1y77 (A) DNA-directed RNA polymerase II largest subuni 1416 4.5 7 0.99v1 + (-0.08)v2 + 0.13v3 + 0.72v4
1nik (A) RPB1 1388 4.1 7 1.0v1 + 1.0v4
1r9s (A) DNA-directed RNA polymerase II largest subuni 1381 4.25 7 1.0v1 + 1.0v4
2e2h (A) DNA-directed RNA polymerase II largest subuni 1398 3.95 5 1.0v1

Associated Chains for 5-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
2b63 (A) DNA-directed RNA polymerase II largest subuni 1416 3.8 7 0.97v1 + 0.18v3 + 0.73v4 + 0.58v5
2nvs (A) DNA-directed RNA polymerase II largest subuni 1411 3.4 7 1.0v1 + (-0.05)v3 + 0.63v4 + 0.18v5
1twf (A) DNA-directed RNA polymerase II largest subuni 1419 2.3 4 1.0v2 + 1.0v5
2nvy (A) DNA-directed RNA polymerase II largest subuni 1419 3.4 3 1.0v2

Associated Chains for 6-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
2nvt (A) DNA-directed RNA polymerase II largest subuni 1411 3.36 7 1.0v1 + 1.0v4 + 1.0v6
1r9s (A) DNA-directed RNA polymerase II largest subuni 1381 4.25 7 1.0v1 + 1.0v4