Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-101   ALA-102  6.3 6.2 2.5 16.5 62.8 65.1 64.8
 ALA-102   PRO-103  2.6 2.6 -10.8 15.0 103.8 112.2 -25.1
 PRO-103   ASN-104  2.8 3.5 -17.7 12.2 64.7 72.2 46.5
 ASN-104   PHE-105  3.3 3.7 -7.8 16.4 34.3 33.9 -62.3
 PHE-105   ALA-106  3.2 3.5 4.3 -10.7 110.4 107.4 15.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-210   SER-211  16.8 16.9 -1.1 -3.7 136.5 134.5 -23.0
 SER-211   LEU-212  15.0 14.8 -10.2 -1.0 108.6 113.5 -31.6
 LEU-212   ASP-213  17.6 17.2 -20.8 -26.6 117.8 121.9 -135.4
 ASP-213   ARG-214  15.6 15.2 7.5 -3.7 123.1 85.1 54.7
 ARG-214   THR-215  14.1 12.1 0.2 45.8 60.4 45.4 161.5
 THR-215   SER-216  11.4 11.0 -42.5 11.8 91.0 62.2 86.6
 SER-216   PHE-217  10.5 10.2 -12.6 1.2 78.5 79.9 -37.4
 PHE-217   VAL-218  6.9 6.8 -8.9 7.5 145.0 140.9 -3.6
 VAL-218   PRO-219  5.9 5.7 -5.0 -6.6 106.1 92.2 23.0
 PRO-219   GLY-220  5.7 5.6 3.4 4.9 124.8 128.2 -26.7
 GLY-220   VAL-221  3.8 3.5 -10.0 5.9 104.3 109.2 7.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-237   LEU-238  3.9 3.7 11.4 -11.1 148.6 147.9 22.6
 LEU-238   GLU-239  4.4 4.1 1.1 3.0 84.1 80.1 1.7
 GLU-239   PRO-240  7.6 7.3 3.0 -2.7 110.8 117.7 -30.9
 PRO-240   LEU-241  10.1 9.8 2.5 -11.3 174.9 164.7 52.6
 LEU-241   LEU-242  9.1 9.0 3.6 -6.1 110.8 98.8 10.1
 LEU-242   ASP-243  10.3 10.3 3.6 -12.7 95.3 84.2 0.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees