Penicillin-Binding Protein 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-89   ASN-90  4.7 4.8 14.3 -1.7 42.4 38.5 -42.2
 ASN-90   GLY-91  4.1 4.1 -160.1 135.8 99.4 103.6 28.6
 GLY-91   GLN-92  1.3 3.1 13.6 -14.8 136.8 116.5 26.1
 GLN-92   ARG-93  1.3 1.1 0.8 4.7 118.5 121.3 18.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-291   ASP-292  3.3 3.9 -27.9 11.5 62.0 60.3 29.6
 ASP-292   THR-293  2.0 3.2 -2.5 8.0 125.5 117.3 13.9
 THR-293   ASN-294  2.6 2.5 7.4 -8.4 103.8 103.1 2.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees