Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-284   LEU-285  23.0 23.1 27.3 5.3 137.3 135.7 -607.9
 LEU-285   ASN-286  22.0 22.1 -10.4 9.6 27.5 25.7 10.8
 ASN-286   GLN-287  22.6 22.6 -1.5 13.5 53.2 49.0 -121.8
 GLN-287   ARG-288  20.6 20.9 -18.5 12.4 92.0 99.4 113.4
 ARG-288   LYS-289  18.4 18.5 -6.1 -0.5 142.5 136.4 -14.5
 LYS-289   LEU-290  17.4 17.4 6.0 -9.3 101.9 103.1 115.6
 LEU-290   VAL-291  17.1 17.2 8.3 -7.1 119.8 120.1 -36.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-304   GLY-305  6.6 6.8 -1.6 -11.9 140.4 141.2 -352.3
 GLY-305   ASN-306  6.3 6.3 -8.0 -27.5 102.2 104.4 -218.9
 ASN-306   VAL-307  9.3 8.8 -7.4 -49.9 75.3 106.6 -192.9
 VAL-307   GLY-308  11.6 10.2 -3.2 8.2 156.6 125.2 29.9
 GLY-308   VAL-309  12.1 12.5 15.0 37.4 83.4 101.4 -62.4
 VAL-309   GLY-310  15.4 15.9 23.5 19.4 64.1 62.0 478.4
 GLY-310   ILE-311  16.6 16.3 -16.7 3.5 52.1 48.6 267.8
 ILE-311   ALA-312  15.8 16.2 -9.0 -21.5 49.6 35.7 569.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-319   ARG-320  9.1 9.1 2.4 -2.6 18.8 14.8 23.0
 ARG-320   GLU-321  11.0 10.8 0.5 1.6 61.0 62.9 -2.4
 GLU-321   GLU-322  13.0 12.9 1.2 -0.2 76.6 77.4 69.8
 GLU-322   GLY-323  10.4 10.4 -5.8 5.0 51.8 51.0 -22.9
 GLU-322   GLY-323  10.4 10.4 -5.8 5.0 51.8 51.0 -22.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-322   GLY-323  10.4 10.4 -5.8 5.0 51.8 51.0 -22.9
 GLU-322   GLY-323  10.4 10.4 -5.8 5.0 51.8 51.0 -22.9
 GLY-323   CYS-324  7.9 7.9 -2.6 3.1 110.4 108.8 71.4
 CYS-324   ALA-325  5.0 5.0 9.7 -7.2 62.7 62.0 12.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-330   THR-331  9.3 9.3 5.6 -12.1 100.0 99.7 14.6
 THR-331   VAL-332  12.2 12.2 13.0 -21.7 129.6 136.9 114.2
 VAL-332   GLU-333  14.9 14.8 5.3 -11.5 135.6 129.4 65.4
 GLU-333   THR-334  15.7 15.8 14.8 -5.8 88.0 86.4 -46.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-335   PRO-336  19.3 19.4 -1.7 -5.7 21.9 24.9 109.5
 PRO-336   ILE-337  18.2 18.2 -9.0 13.0 86.7 83.1 -3.8
 ILE-337   GLY-338  15.0 15.1 -2.8 0.6 31.6 34.4 21.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-371   ASP-372  7.6 7.7 0.7 4.0 93.1 92.4 85.4
 ASP-372   VAL-373  5.0 5.0 2.1 -16.1 110.2 114.5 116.2
 VAL-373   CYS-374  2.5 2.6 10.9 -11.7 111.5 103.5 246.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-375   LEU-376  7.0 7.2 -3.9 8.6 129.0 127.7 165.7
 LEU-376   SER-377  9.2 9.3 -2.7 -6.0 109.1 113.7 -35.3
 SER-377   PHE-378  12.0 12.2 -17.4 15.8 163.1 168.6 3.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-379   GLU-380  15.0 14.9 -3.6 -2.3 53.4 53.9 105.9
 GLU-380   VAL-381  13.0 13.2 -1.0 3.0 96.3 93.8 73.0
 VAL-381   ASP-382  10.3 10.4 10.7 -9.5 147.4 146.3 -73.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-385   ASN-386  5.8 5.6 -5.2 -4.2 88.4 88.4 150.8
 ASN-386   VAL-387  5.0 5.0 -8.9 9.2 58.2 62.2 41.9
 VAL-387   GLY-388  7.8 7.8 -2.0 7.5 111.4 114.0 -10.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-411   ILE-412  1.7 1.5 1.7 -3.7 109.8 108.2 49.2
 ILE-412   ILE-413  1.5 1.7 1.4 5.3 84.7 84.9 -30.6
 ILE-413   PHE-414  4.6 4.8 -1.3 -0.4 70.4 65.0 46.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-420   GLY-421  21.4 22.4 3.2 1.1 77.8 66.3 -19.0
 GLY-421   SER-422  25.0 25.9 -3.6 31.5 51.3 62.1 -354.6
 SER-422   LEU-423  27.0 28.3 -27.7 4.5 77.8 61.2 116.3
 LEU-423   LYS-424  25.5 26.2 -5.7 -4.4 19.1 19.9 130.9
 LYS-424   THR-425  27.4 27.9 -12.6 -1.6 70.0 66.8 73.0
 THR-425   GLU-426  26.6 26.5 -2.3 -26.2 16.2 8.6 760.2
 GLU-426   ILE-427  27.9 27.0 16.1 7.7 110.8 111.7 -443.4
 ILE-427   ALA-428  25.9 25.6 9.4 2.7 142.1 132.7 -165.1
 ALA-428   ASP-429  28.5 28.6 -5.3 -7.8 86.8 81.8 -3.6
 ASP-429   GLY-430  29.1 29.3 9.7 -5.1 76.6 77.3 -27.0
 GLY-430   LYS-431  25.6 25.8 2.6 -7.4 7.6 12.6 -118.9
 LYS-431   LEU-432  26.2 26.3 0.0 7.4 116.3 118.5 262.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-433   ILE-434  28.1 28.3 -4.9 -5.8 53.4 48.0 162.7
 ILE-434   VAL-435  27.9 28.0 -9.8 22.6 83.5 80.7 -109.3
 VAL-435   GLN-436  31.0 31.0 -13.9 3.5 35.4 23.4 268.8
 GLN-436   GLU-437  30.2 30.3 21.9 -17.1 114.7 115.3 -66.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-446   LEU-447  9.7 9.8 22.4 -24.6 105.9 109.5 75.3
 LEU-447   PRO-448  10.0 10.1 7.2 -10.5 36.6 39.8 -67.0
 PRO-448   GLU-449  11.7 11.8 7.6 1.0 100.9 102.8 117.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-462   ASP-463  5.1 5.1 -9.9 6.1 101.6 96.6 -17.4
 ASP-463   VAL-464  4.5 4.5 -5.2 4.6 83.5 84.7 40.5
 VAL-464   ARG-465  3.6 3.4 6.7 -7.7 75.9 77.6 66.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-524   VAL-525  10.8 10.7 -4.7 0.6 61.2 67.8 144.1
 VAL-525   LEU-526  8.5 8.1 2.7 8.6 40.9 37.0 195.5
 LEU-526   PRO-527  5.4 5.2 -1.9 3.5 94.5 91.1 -164.1
 PRO-527   GLU-528  6.6 7.0 -3.1 1.0 73.3 75.2 13.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees