Ras-Related Protein Rab-5a
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-36
VAL-37
5.8
5.6
2.9
-7.9
95.6
96.8
-3.7
VAL-37
LEU-38
2.8
2.4
3.7
3.4
60.1
63.7
2.3
LEU-38
ARG-39
2.0
2.6
2.7
-1.9
5.3
6.9
-0.1
ARG-39
PHE-40
2.4
2.6
-2.5
2.8
106.9
103.7
0.7
PHE-40
VAL-41
2.5
1.8
-2.4
-22.6
84.8
81.6
-0.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PHE-57
LEU-58
1.3
3.2
-1.4
-45.7
44.9
34.3
39.3
LEU-58
THR-59
1.7
4.5
36.1
-16.0
122.3
112.7
-3.1
THR-59
GLN-60
4.8
7.2
3.3
12.9
145.5
171.0
-2.5
GLN-60
THR-61
5.7
7.7
15.8
-13.5
117.3
103.3
4.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees