Signal Recognition 54 Kda Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-292   GLY-293  1.5 4.8 107.6 -175.5 118.2 102.4 47.9
 GLY-293   MET-294  2.0 5.4 142.1 -34.0 173.5 135.7 -128.4
 MET-294   GLY-295  3.6 3.5 151.9 -50.9 127.2 127.5 245.2
 GLY-295   ASP-296  3.7 2.1 75.4 17.8 80.4 140.7 -15.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-310   ASP-311  2.9 2.1 54.9 -14.0 40.5 38.5 51.1
 ASP-311   LYS-312  5.1 4.7 22.3 20.2 44.6 44.6 36.8
 LYS-312   ILE-313  3.5 2.1 11.9 -8.0 51.0 43.4 12.9
 ILE-313   GLN-314  0.1 2.3 -39.1 52.0 45.8 48.9 2.3
 ILE-313   GLN-314  0.1 2.3 -39.1 52.0 45.8 48.9 2.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-313   GLN-314  0.1 2.3 -39.1 52.0 45.8 48.9 2.3
 ILE-313   GLN-314  0.1 2.3 -39.1 52.0 45.8 48.9 2.3
 GLN-314   LYS-315  3.5 5.3 -74.3 74.5 41.2 29.5 -1.7
 LYS-315   LYS-316  3.7 5.4 -44.5 -66.9 54.3 45.5 78.8
 LYS-316   MET-317  1.9 3.2 -169.9 -33.9 52.4 128.8 -6.3
 MET-317   GLU-318  1.6 3.2 -84.3 39.0 37.2 63.1 60.6
 GLU-318   ASP-319  3.2 5.2 174.6 21.9 135.1 125.3 -151.0
 LEU-327   THR-328  10.0 10.9 39.9 -61.2 20.6 98.3 -13.9
 THR-328   LEU-329  8.6 9.7 158.7 106.1 72.7 72.9 -40.5
 LEU-329   ARG-330  11.2 12.7 28.3 -22.0 19.8 32.6 14.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees