Nucleoside Diphosphate Kinase, Cytosolic

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-41   LEU-42  1.9 1.8 -0.9 3.4 145.6 145.8 92.0
 LEU-42   LYS-43  3.1 3.0 13.9 -11.3 39.8 37.3 152.9
 LYS-43   GLN-44  2.0 2.0 6.8 -14.4 38.0 39.6 36.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-76   VAL-77  4.1 4.4 4.7 -16.0 44.2 43.5 -206.4
 VAL-77   VAL-78  5.5 5.8 -9.0 3.7 131.2 132.4 14.6
 VAL-78   ALA-79  4.9 5.0 -22.3 25.6 147.9 148.5 -52.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees