Beta-Xylosidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-389   LYS-390  19.0 19.0 13.0 -2.4 136.8 136.7 16.6
 LYS-390   GLY-391  20.0 20.0 -167.2 -160.1 92.8 77.2 -280.2
 GLY-391   GLU-392  17.6 16.7 13.8 -19.1 141.5 158.4 105.2
 GLU-392   GLY-393  15.3 15.6 175.1 126.7 64.9 108.0 408.7
 GLY-393   LEU-394  11.6 11.7 -165.5 -168.6 108.3 125.1 142.9
 LEU-394   THR-395  10.8 10.2 1.1 26.0 124.7 118.8 -360.6
 THR-395   LYS-396  8.0 7.2 -11.1 1.3 127.4 129.3 -104.0
 LYS-396   GLU-397  7.0 6.3 14.6 -11.6 117.1 119.2 46.5
 GLU-397   VAL-398  4.5 4.4 6.6 -2.8 72.5 72.8 98.6
 VAL-398   GLN-399  7.8 7.7 -7.6 10.3 70.8 68.4 -112.0
 GLN-399   LEU-400  9.1 9.1 1.5 14.3 92.5 89.1 174.3
 LEU-400   VAL-401  12.7 12.7 28.6 -35.5 105.9 101.0 192.1
 VAL-401   ILE-402  15.5 15.6 -24.3 33.5 67.4 67.9 -75.6
 ILE-402   PRO-403  17.9 18.1 -1.4 9.6 66.8 79.2 -53.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-413   GLN-414  10.6 10.3 6.7 -7.4 62.6 64.6 -45.1
 GLN-414   ILE-415  11.7 11.5 -8.6 -0.2 38.3 40.8 159.1
 ILE-415   VAL-416  11.4 11.3 0.4 15.2 75.0 75.6 -43.9
 VAL-416   ASN-417  14.1 13.9 8.8 -11.9 154.8 148.8 68.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-443   LEU-444  19.6 19.6 -2.9 3.6 153.6 152.2 81.9
 LEU-444   ARG-445  21.0 21.0 -1.5 6.3 94.7 89.8 39.4
 ARG-445   GLN-446  20.3 20.2 -8.2 13.1 92.9 93.3 -53.7
 GLN-446   VAL-447  16.7 16.4 0.0 -3.2 153.2 157.1 7.7
 VAL-447   ALA-448  16.3 16.2 -4.0 6.3 134.2 133.9 -38.9
 ALA-448   GLN-449  18.0 18.2 -0.6 -19.6 88.9 94.9 -128.3
 GLN-449   PRO-450  15.6 15.7 6.2 -0.3 33.6 48.3 150.2
 PRO-450   HIS-451  13.8 13.5 -2.8 3.3 71.8 70.7 -30.1
 HIS-451   VAL-452  10.1 9.7 -3.7 -1.8 92.5 94.5 28.5
 VAL-452   MET-453  8.9 8.5 -0.4 1.1 97.8 94.1 -19.0
 MET-453   THR-454  6.4 6.1 11.1 -7.3 91.7 90.2 62.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-468   VAL-469  6.4 6.3 0.6 -2.1 118.7 120.4 80.2
 VAL-469   LEU-470  4.6 4.1 1.8 -5.9 67.7 68.1 -93.9
 LEU-470   SER-471  8.1 7.5 -1.6 5.2 79.1 75.8 -21.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees