Proto-Oncogene Tyrosine-Protein Kinase Abl1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-376   VAL-377  12.2 12.0 2.2 0.8 24.1 21.9 -2.0
 VAL-377   LYS-378  11.4 11.2 10.2 -12.7 74.3 73.5 2.9
 LYS-378   VAL-379  8.2 8.0 2.2 -7.8 9.3 15.0 2.2
 VAL-379   ALA-380  7.6 7.3 3.4 63.9 87.1 84.1 4.7
 ALA-380   ASP-381  4.2 4.2 -61.9 49.9 175.7 121.9 -11.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-398   ALA-399  3.8 2.2 7.7 23.3 18.0 24.5 24.9
 ALA-399   LYS-400  2.5 2.5 -15.8 22.3 94.0 94.6 4.5
 LYS-400   PHE-401  5.6 6.0 28.1 -14.4 59.8 34.1 10.5
 PHE-401   PRO-402  7.2 7.6 5.2 12.7 71.3 73.3 5.6
 PRO-402   ILE-403  10.5 10.7 -3.4 15.2 64.5 71.3 -3.4
 ILE-403   LYS-404  12.6 13.0 -16.0 21.7 120.6 122.9 1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees