Parm

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-152   GLY-153  5.2 5.1 -13.3 11.6 41.6 46.8 6.6
 GLY-153   TYR-154  2.5 2.1 -17.2 7.1 48.4 50.1 35.6
 TYR-154   GLU-155  3.0 2.7 -7.9 -9.0 13.8 8.0 66.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-301   PHE-302  11.5 11.8 -3.3 11.4 96.0 94.2 -1.6
 PHE-302   LYS-303  9.5 10.0 -15.4 -16.7 39.9 42.4 92.9
 LYS-303   THR-304  11.1 12.3 81.3 -51.5 74.9 61.4 84.5
 THR-304   ASN-305  9.6 13.8 154.0 -44.7 128.9 120.9 -262.4
 ASN-305   ASN-306  11.9 17.3 -107.6 -5.7 122.4 59.8 -40.8
 ASN-306   SER-307  13.9 16.2 78.4 125.1 129.0 129.7 687.6
 SER-307   GLN-308  15.2 13.5 141.5 -1.3 143.6 139.6 -431.7
 GLN-308   TYR-309  14.8 14.1 4.7 -18.4 80.5 72.4 -19.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees