Intermedilysin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-90   SER-91  5.1 4.5 16.2 -27.8 85.9 87.0 26.5
 SER-91   ARG-92  1.8 1.2 -40.9 49.5 162.6 155.1 49.9
 ARG-92   GLU-93  1.8 2.0 -5.8 -3.1 91.5 87.6 -28.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-103   ILE-104  2.5 2.6 -6.0 1.4 107.4 108.3 24.8
 ILE-104   GLU-105  2.2 2.3 -7.3 -1.4 142.2 143.7 -48.0
 GLU-105   LYS-106  1.8 1.6 -7.0 6.9 115.4 112.8 34.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-411   LYS-412  7.0 7.2 4.1 -12.3 18.5 23.4 -53.5
 LYS-412   VAL-413  5.4 5.4 -16.1 8.8 104.8 110.2 31.1
 VAL-413   THR-414  3.1 3.1 -10.6 22.4 140.0 139.7 99.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees