Diol Dehydratase-Reactivating Factor Large Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-74   GLU-75  21.3 22.1 4.2 -5.0 11.8 9.7 -37.5
 GLU-75   ALA-76  20.5 20.9 -10.9 24.0 97.1 90.3 -10.1
 ALA-76   THR-77  18.7 18.5 32.9 23.3 26.9 51.5 363.5
 THR-77   PRO-78  16.0 15.0 22.2 -17.0 92.4 34.6 -27.6
 PRO-78   VAL-79  16.1 14.6 -66.0 -3.8 101.7 98.2 -105.7
 VAL-79   ILE-80  13.2 11.8 -17.0 10.1 82.7 78.0 -11.2
 ILE-80   GLY-81  13.3 12.4 9.7 6.4 88.6 85.1 12.9
 GLY-81   ASP-82  11.8 11.1 -3.8 9.4 96.6 100.7 5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-363   LYS-364  8.7 8.5 7.2 -26.2 72.9 69.3 13.7
 LYS-364   SER-365  10.2 9.8 12.9 -45.2 137.1 142.8 203.3
 SER-365   ASP-366  13.4 12.7 13.1 72.4 87.3 67.9 93.0
 ASP-366   ARG-367  15.2 15.7 -47.0 -88.3 80.9 142.5 -440.8
 ARG-367   LEU-368  18.8 18.1 87.4 -39.6 28.2 100.9 285.0
 LEU-368   GLN-369  20.0 19.8 101.4 2.4 98.4 96.3 -174.9
 GLN-369   MET-370  23.3 23.5 29.2 -16.4 28.9 30.5 170.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-410   ILE-411  9.0 9.1 -1.0 6.9 73.3 74.5 -28.4
 ILE-411   LEU-412  7.7 7.6 4.6 -0.3 43.7 48.4 43.3
 LEU-412   ASP-413  5.6 5.0 -19.1 -5.9 80.9 86.6 154.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-419   ASP-420  5.6 5.4 16.0 -22.7 106.8 103.8 11.2
 ASP-420   ALA-421  6.8 6.6 -8.4 -5.6 133.2 134.5 -97.5
 ALA-421   SER-422  6.6 6.3 13.5 -25.7 99.6 100.1 92.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-432   THR-433  10.5 10.6 -1.6 1.8 130.6 138.1 -6.9
 THR-433   HIS-434  7.0 7.3 6.1 5.2 101.0 98.8 -39.1
 HIS-434   LEU-435  5.5 5.7 5.6 0.9 69.0 70.3 31.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-530   THR-531  5.6 6.4 -14.9 13.9 39.9 34.7 -11.5
 THR-531   ASN-532  6.2 6.8 9.5 -16.8 114.2 108.8 13.1
 ASN-532   ALA-533  2.9 3.3 4.0 -6.2 53.3 51.5 32.8
 ALA-533   LEU-534  1.5 1.8 10.9 -7.0 100.9 99.4 0.9
 LEU-534   ARG-535  5.1 5.3 -4.6 -3.2 23.2 27.4 53.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-552   VAL-553  5.8 6.1 1.4 3.4 120.5 117.6 -29.4
 VAL-553   LEU-554  6.5 6.3 8.1 -1.7 54.0 49.3 70.5
 LEU-554   VAL-555  6.0 5.6 -5.9 10.4 84.6 86.8 53.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-564   PRO-565  8.3 8.3 -4.1 6.9 113.4 116.2 21.9
 PRO-565   GLN-566  5.4 5.3 17.4 -16.4 60.1 65.7 -10.3
 GLN-566   LEU-567  5.7 6.4 -3.1 0.7 51.8 47.2 51.7
 LEU-567   VAL-568  7.3 7.8 -9.1 12.4 62.5 66.4 -21.6
 VAL-568   THR-569  4.0 4.4 0.0 -6.9 50.0 49.7 -6.7
 THR-569   ASP-570  2.8 3.6 7.7 -10.3 81.4 84.4 40.8
 ASP-570   ALA-571  6.5 7.4 5.0 9.8 137.1 141.6 -54.1
 ALA-571   LEU-572  7.5 8.0 35.1 -43.8 98.1 90.5 -15.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees