Mitogen-Activated Protein Kinase 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-168   ALA-169  8.4 8.6 4.2 -3.2 32.4 32.9 6.3
 ALA-169   ARG-170  7.5 7.5 -16.1 30.8 127.4 132.4 21.6
 ARG-170   VAL-171  6.5 6.4 4.8 -1.5 39.2 37.0 -18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-189   TRP-190  0.9 2.0 -55.5 2.6 96.5 92.2 9.5
 TRP-190   TYR-191  2.8 2.1 -7.3 5.2 34.7 33.0 -5.2
 TYR-191   ARG-192  3.8 3.0 -4.1 14.5 40.2 42.3 -16.8
 ARG-192   ALA-193  2.5 3.0 6.2 -8.8 99.3 101.0 9.8
 ALA-193   PRO-194  5.7 6.2 -2.3 -8.7 105.3 107.5 5.7
 PRO-194   GLU-195  8.7 9.4 21.2 -16.3 123.4 125.9 -14.2
 GLU-195   ILE-196  9.0 10.1 17.2 13.9 79.6 87.4 7.6
 ILE-196   MET-197  6.3 8.0 -6.4 -11.0 153.7 126.4 -23.3
 MET-197   LEU-198  7.5 10.5 15.4 -14.9 94.7 111.1 -5.1
 LEU-198   ASN-199  11.0 13.4 -60.4 142.2 54.3 32.1 -147.6
 ASN-199   SER-200  10.6 13.3 -27.5 -51.6 25.4 50.1 166.1
 GLY-202   TYR-203  9.2 4.7 -34.6 -64.8 97.2 31.4 -277.0
 TYR-203   THR-204  6.4 4.3 -130.8 6.9 46.8 58.1 230.0
 THR-204   LYS-205  4.2 3.7 -31.0 -23.0 116.1 115.9 -49.7
 LYS-205   SER-206  3.8 3.9 10.0 -21.4 41.0 38.5 -18.0
 SER-206   ILE-207  6.7 6.5 19.2 -10.0 21.4 27.5 18.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees