Nf-Kappa-B P65

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-187   ALA-188  7.1 8.2 86.6 -15.4 107.5 85.2 -5.5
 ALA-188   PRO-189  4.9 5.4 14.2 -7.4 148.5 142.8 -3.4
 PRO-189   ASN-190  4.1 7.5 165.1 -25.0 83.5 147.2 -44.6
 ASN-190   THR-191  1.9 4.9 -54.8 -93.2 73.0 86.4 -27.6
 THR-191   ALA-192  5.6 3.0 4.0 -16.5 137.7 120.8 4.5
 ALA-192   GLU-193  6.3 6.4 47.9 19.6 156.9 169.4 -39.0
 GLU-193   LEU-194  7.7 7.0 17.9 1.7 136.0 121.1 213.6
 LEU-194   LYS-195  6.6 6.3 17.1 3.0 137.0 132.6 -9.4

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees