Oxidoreductase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-16   GLY-17  7.3 7.4 -8.3 8.6 35.2 36.8 47.6
 GLY-17   PHE-18  6.6 6.8 25.0 -20.2 84.9 79.2 28.7
 PHE-18   GLY-19  7.3 7.9 -13.5 93.1 33.1 39.1 -398.4
 GLY-19   CYS-20  10.4 11.2 -82.8 -120.1 122.0 81.8 -45.3
 CYS-20   MET-21  14.1 11.5 -65.1 99.7 139.2 82.7 344.8
 MET-21   SER-22  14.4 15.1 -161.7 -2.6 55.5 140.2 371.3
 SER-22   LEU-23  16.7 15.7 -135.5 23.7 107.9 100.0 -167.0
 LEU-23   GLY-24  15.7 15.2 -24.1 5.5 92.3 93.4 -33.2
 GLY-24   THR-25  19.5 19.0 -1.2 -16.7 41.8 42.3 78.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-40   GLY-41  2.6 2.7 16.1 -3.2 67.9 62.4 -27.0
 GLY-41   ILE-42  1.9 1.7 4.0 4.3 46.5 50.9 23.9
 ILE-42   ASN-43  1.1 1.4 4.1 3.8 30.3 28.9 39.9
 ASN-43   TYR-44  1.0 1.1 -1.0 -9.0 144.0 142.6 -42.8
 TYR-44   LEU-45  3.1 3.6 -5.4 5.8 93.3 93.8 11.6
 LEU-45   ASP-46  4.7 5.2 7.2 -6.9 38.6 40.8 7.7
 ASP-46   THR-47  7.7 8.3 1.6 -40.2 80.4 76.7 -135.2
 THR-47   ALA-48  9.6 10.4 -154.6 -93.9 109.3 144.1 563.2
 ALA-48   ASP-49  12.2 12.4 2.3 -6.7 131.3 58.3 46.3
 ASP-49   LEU-50  15.7 13.4 -163.5 58.1 61.0 80.2 127.7
 LEU-50   TYR-51  16.6 17.0 -156.5 -112.5 64.2 38.1 -461.5
 TYR-51   ASN-52  20.1 17.3 79.1 -18.7 73.4 83.9 106.5
 ASN-52   GLN-53  20.6 19.8 22.8 169.2 113.6 24.9 -548.9
 GLN-53   GLY-54  18.0 19.2 -63.1 -155.9 111.8 93.9 205.7
 GLY-54   LEU-55  14.7 16.0 151.3 45.9 113.2 137.4 605.5
 LEU-55   ASN-56  12.7 17.2 -171.6 0.5 139.1 44.7 -114.4
 ASN-56   GLU-57  14.3 14.7 -162.0 9.3 110.3 108.0 -430.7
 GLU-57   GLN-58  11.6 11.8 -9.1 8.4 94.2 88.2 -1.6
 GLN-58   PHE-59  13.8 13.9 -0.1 0.0 28.6 23.8 -38.5
 PHE-59   VAL-60  13.8 14.0 4.3 -1.6 102.7 103.1 21.1
 VAL-60   GLY-61  10.0 10.2 -0.7 -2.6 121.7 117.5 -24.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-71   ILE-72  2.8 2.4 1.2 5.0 45.1 44.4 26.3
 ILE-72   LEU-73  1.9 2.0 -6.6 6.0 102.2 100.5 2.4
 LEU-73   ALA-74  2.1 2.4 -2.8 1.5 122.5 126.0 13.4
 ALA-74   THR-75  5.6 5.9 -7.2 0.5 109.1 106.4 -57.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees