T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  MET-102   VAL-103  8.0 7.1 9.4 19.9 126.4 128.2 -48.5  VAL-103   PHE-104  7.4 6.3 -38.3 34.2 98.8 114.9 19.6  PHE-104   GLN-105  5.8 5.3 -169.9 43.7 132.0 125.6 -143.5  GLN-105   MET-106  8.1 7.8 -133.9 -54.9 66.5 64.1 252.6  MET-106   GLY-107  10.2 10.8 -140.9 -145.8 48.5 12.3 -185.8  MET-102   VAL-103  12.1 12.3 9.4 19.9 35.6 28.3 83.0  VAL-103   PHE-104  11.6 12.3 -38.3 34.2 154.1 140.0 -34.4  PHE-104   GLN-105  12.9 13.8 -169.9 43.7 94.3 92.6 32.0  GLN-105   MET-106  11.3 11.7 -133.9 -54.9 90.4 108.8 -147.2  MET-106   GLY-107  8.4 8.1 -140.9 -145.8 151.3 117.3 225.9  GLY-107   GLU-108  6.9 9.0 26.6 -18.9 97.9 127.2 -35.6  MET-102   VAL-103  8.0 7.1 9.4 19.9 126.4 128.2 -48.5  VAL-103   PHE-104  7.4 6.3 -38.3 34.2 98.8 114.9 19.6  PHE-104   GLN-105  5.8 5.3 -169.9 43.7 132.0 125.6 -143.5  GLN-105   MET-106  8.1 7.8 -133.9 -54.9 66.5 64.1 252.6  MET-106   GLY-107  10.2 10.8 -140.9 -145.8 48.5 12.3 -185.8  MET-102   VAL-103  12.1 12.3 9.4 19.9 35.6 28.3 83.0  VAL-103   PHE-104  11.6 12.3 -38.3 34.2 154.1 140.0 -34.4  PHE-104   GLN-105  12.9 13.8 -169.9 43.7 94.3 92.6 32.0  GLN-105   MET-106  11.3 11.7 -133.9 -54.9 90.4 108.8 -147.2  MET-106   GLY-107  8.4 8.1 -140.9 -145.8 151.3 117.3 225.9  GLY-107   GLU-108  6.9 9.0 26.6 -18.9 97.9 127.2 -35.6 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LYS-135   SER-136  6.6 4.2 -153.2 -162.0 44.8 14.4 -202.7  SER-136   ARG-137  5.2 3.9 -130.7 -19.1 26.3 64.4 513.3  ARG-137   TRP-138  6.6 5.5 22.2 53.4 81.5 108.0 41.1  TRP-138   TYR-139  10.0 7.3 -38.7 -17.3 134.7 127.5 -207.3  TYR-139   ASN-140  9.9 9.2 62.3 -52.1 99.6 92.8 63.9 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees