Precursor Of Periplasmic Sugar Receptor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-113   ASN-114  4.8 5.1 0.4 -2.1 134.9 124.7 8.6
 ASN-114   VAL-115  1.8 2.0 -7.6 -0.6 91.0 93.1 11.7
 VAL-115   ALA-116  2.3 1.9 2.4 -4.3 123.9 123.8 22.7
 ALA-116   VAL-117  5.1 4.8 -3.7 -3.2 12.6 8.4 79.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-241   THR-242  2.2 2.4 -4.2 12.6 83.1 78.7 -14.6
 THR-242   ALA-243  5.4 5.6 -7.6 4.0 51.0 55.2 16.3
 ALA-243   THR-244  4.9 5.1 -2.1 3.5 57.0 59.4 -3.0
 THR-244   VAL-245  3.3 3.5 4.1 2.0 141.0 138.8 -4.5
 VAL-245   ALA-246  4.5 4.8 -23.3 34.4 78.1 81.9 -9.4
 ALA-246   GLN-247  6.9 7.3 -23.6 -4.1 32.8 30.0 196.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-281   ASP-282  12.0 12.1 -9.1 -0.6 49.5 53.4 74.6
 ASP-282   SER-283  11.2 11.3 4.7 -7.0 148.0 153.6 -9.4
 SER-283   ILE-284  9.0 9.3 -4.2 3.4 42.4 52.0 15.6
 ILE-284   LEU-285  10.1 10.5 -24.9 18.4 47.9 51.8 63.0
 LEU-285   VAL-286  8.8 8.9 4.4 -16.3 151.8 156.2 49.8
 VAL-286   THR-287  8.4 8.8 6.2 -1.6 132.5 125.9 -52.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees