4-Diphosphocytidyl-2-C-Methylerythritol Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-13   ALA-14  10.0 10.3 -1.5 6.2 135.3 135.8 109.9
 ALA-14   ALA-15  10.6 10.9 -3.3 -2.8 117.7 119.3 5.6
 PRO-26   LYS-27  14.9 14.5 -157.6 9.7 79.1 65.9 510.1
 LYS-27   GLN-28  13.6 13.4 -7.7 -6.2 94.5 100.1 -16.8
 GLN-28   TYR-29  10.0 9.7 10.1 -3.3 20.4 13.6 27.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-46   ALA-47  6.6 6.7 3.6 -0.6 86.1 87.3 -14.4
 ALA-47   HIS-48  8.6 8.9 -2.6 3.6 141.8 141.7 40.4
 HIS-48   PRO-49  9.7 10.0 5.2 -11.6 98.2 99.2 -48.1
 PRO-49   ARG-50  12.7 12.9 9.4 -6.8 61.8 58.1 11.1
 ARG-50   VAL-51  11.9 12.1 6.2 -10.2 113.1 114.6 162.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-64   PHE-65  11.1 11.5 -26.9 3.3 66.4 73.1 83.4
 PHE-65   ALA-66  9.4 9.6 7.0 0.8 49.9 46.9 59.4
 ALA-66   GLN-67  10.3 10.2 -14.9 18.2 137.5 133.1 50.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-68   PRO-69  4.8 4.8 0.5 -14.7 89.1 91.5 -49.5
 PRO-69   LEU-70  3.9 4.0 18.1 5.3 35.0 28.5 245.9
 LEU-70   ALA-71  5.2 5.1 -12.5 1.2 85.3 88.8 -14.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-102   LEU-103  8.7 8.8 -5.7 10.1 87.1 87.5 -12.7
 LEU-103   VAL-104  5.2 5.1 -6.7 7.9 120.1 119.0 6.8
 VAL-104   HIS-105  5.4 5.3 4.3 -4.3 77.2 76.8 22.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-120   LEU-121  5.1 5.3 -2.3 1.4 90.7 90.1 0.7
 LEU-121   ALA-122  7.1 7.4 -1.0 2.0 139.2 139.9 23.5
 ALA-122   LEU-123  9.4 9.6 4.9 -4.8 39.3 38.5 16.9
 LEU-123   SER-124  6.9 7.2 0.6 1.2 97.8 96.6 47.4
 LEU-123   SER-124  6.9 7.2 0.6 1.2 97.8 96.6 47.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-123   SER-124  6.9 7.2 0.6 1.2 97.8 96.6 47.4
 LEU-123   SER-124  6.9 7.2 0.6 1.2 97.8 96.6 47.4
 SER-124   GLU-125  9.4 9.8 -4.0 26.2 54.1 51.8 -222.9
 GLU-125   THR-126  11.9 12.2 -33.1 14.6 26.6 14.7 175.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-165   PRO-166  4.6 4.5 0.5 -4.1 118.3 113.1 20.1
 PRO-166   GLN-167  1.8 1.6 0.9 3.2 11.0 14.6 13.5
 GLN-167   PHE-168  2.8 2.8 0.5 -5.2 92.1 91.0 25.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-189   ASP-190  14.5 14.5 -69.2 52.8 105.0 112.3 -64.1
 ASP-190   GLU-191  10.9 10.8 0.2 10.3 116.5 119.0 -45.3
 GLU-191   ALA-192  9.3 9.4 -8.9 7.8 12.0 12.7 -20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees