DNA Replication Initiator (Cdc21/cdc54)
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-110
VAL-111
10.8
10.9
17.1
-12.3
128.3
127.7
-68.0
VAL-111
ASP-112
7.8
7.9
-0.7
3.4
110.6
104.2
5.1
ASP-112
GLY-113
8.7
8.6
-0.1
3.4
80.6
85.1
-30.9
GLY-113
ILE-114
7.2
7.1
4.3
-11.0
42.4
48.0
-8.3
ILE-114
VAL-115
8.3
8.3
1.2
-3.5
53.5
52.1
-73.9
VAL-115
ARG-116
6.8
6.9
0.7
-8.7
89.6
93.1
-158.2
VAL-115
ARG-116
6.8
6.9
0.7
-8.7
89.6
93.1
-158.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-115
ARG-116
6.8
6.9
0.7
-8.7
89.6
93.1
-158.2
VAL-115
ARG-116
6.8
6.9
0.7
-8.7
89.6
93.1
-158.2
ARG-116
LYS-117
7.8
8.1
70.6
-59.6
24.2
35.3
226.5
LYS-117
THR-118
8.3
7.8
-17.5
3.7
127.8
131.7
-192.3
THR-118
ASP-119
6.4
6.0
2.9
-3.0
62.1
55.8
35.4
ASP-119
GLU-120
6.9
6.6
156.7
-124.8
7.5
13.7
686.2
GLU-120
ILE-121
6.0
7.0
1.4
-29.2
70.6
76.2
-355.6
ILE-121
ARG-122
3.7
4.1
-17.2
20.6
108.0
123.7
-76.6
ARG-122
PRO-123
6.5
6.6
21.9
-12.7
76.5
82.5
4.2
PRO-123
ARG-124
7.8
7.8
12.8
-7.1
121.2
121.2
-93.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-178
LEU-179
3.5
3.7
-42.9
33.2
106.3
111.9
-19.0
LEU-179
GLN-180
3.0
3.0
-27.6
-2.2
157.9
160.2
-665.1
GLN-180
GLU-181
5.3
5.1
1.2
23.1
52.1
54.9
697.2
GLU-181
PRO-182
5.2
5.2
3.0
-4.0
80.2
79.1
6.3
PRO-182
LEU-183
8.9
8.9
2.0
-1.8
34.9
34.1
40.8
LEU-183
GLU-184
10.4
10.5
-0.3
0.1
143.0
142.2
30.7
GLU-184
ASN-185
12.5
12.6
2.6
-4.4
52.1
54.5
-21.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-201
ASP-202
6.9
6.9
19.2
-16.1
85.6
84.1
31.7
ASP-202
LEU-203
7.2
7.5
14.3
-11.0
144.6
143.1
-44.6
LEU-203
VAL-204
6.4
6.6
-22.3
23.7
87.7
90.0
153.7
VAL-204
ASP-205
2.9
3.0
-3.2
4.4
105.5
106.8
53.3
ASP-205
THR-206
4.5
4.3
-3.4
-3.0
75.3
75.2
-41.2
THR-206
LEU-207
7.1
7.0
9.5
-5.0
138.6
141.3
-131.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees