Herpesvirus Entry Mediator

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-59   MET-60  3.8 4.0 -19.0 26.3 49.1 50.6 -12.4
 MET-60   CYS-61  3.2 3.7 -16.4 1.7 40.7 45.4 43.9
 CYS-61   ASP-62  1.0 1.1 -2.3 -36.0 28.1 34.8 95.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-69   SER-70  4.5 4.3 -14.5 21.9 84.2 75.4 4.3
 SER-70   ARG-71  7.9 7.7 -10.0 16.1 22.3 26.4 -19.2
 ARG-71   ASN-72  7.3 6.5 10.5 -7.3 101.9 91.8 4.4
 ASN-72   CYS-73  5.6 5.3 -20.8 1.6 31.3 31.3 55.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-79   VAL-80  2.1 1.9 -19.0 17.2 64.3 64.1 7.1
 VAL-80   CYS-81  4.9 5.1 -0.6 -8.2 17.2 13.1 22.0
 CYS-81   GLY-82  4.6 4.8 -7.2 -0.5 63.2 63.8 32.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees