Uroporphyrinogen III Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-37   VAL-38  9.6 9.8 0.2 -0.6 116.6 120.0 -1.2
 VAL-38   GLN-39  7.0 7.2 -9.0 31.2 10.2 10.8 -52.8
 GLN-39   ALA-40  7.6 8.0 -21.8 59.5 70.2 75.0 -61.7
 ALA-40   THR-41  10.3 10.9 154.9 -11.3 135.1 100.7 -119.5
 THR-41   GLU-42  10.7 12.3 32.9 80.8 136.0 95.5 544.6
 GLU-42   LYS-43  12.3 12.5 22.8 25.1 139.5 148.9 -91.9
 LYS-43   VAL-44  13.2 10.6 2.9 -30.7 144.2 149.8 51.6
 VAL-44   PRO-45  11.7 11.0 -11.2 7.4 48.9 46.3 -0.7
 PRO-45   VAL-46  14.5 11.6 -4.1 -34.7 46.3 44.8 57.9
 VAL-46   PRO-47  14.5 8.7 153.0 11.1 149.6 152.0 -423.3
 PRO-47   GLU-48  14.0 10.1 -18.8 -17.5 92.4 53.4 38.5
 GLU-48   TYR-49  10.9 7.9 31.1 73.8 95.4 66.4 35.6
 TYR-49   ARG-50  9.0 9.4 -76.1 -5.2 49.8 52.8 136.7
 ARG-50   ASP-51  11.3 12.3 -0.6 -3.6 53.1 38.7 11.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-160   MET-161  7.8 8.2 -15.0 -16.3 25.2 31.5 64.3
 MET-161   PRO-162  7.1 7.1 15.3 10.5 91.4 76.8 13.4
 PRO-162   TYR-163  10.5 9.9 -15.5 23.7 43.4 66.2 -27.0
 TYR-163   ARG-164  9.8 8.8 -16.4 20.5 66.8 74.4 -1.3
 ARG-164   HIS-165  7.2 6.1 -5.8 -12.9 13.3 30.7 22.9
 HIS-165   LEU-166  6.4 5.9 6.3 9.9 86.5 89.8 6.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees