Ionotropic Glutamate Receptor 5

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-106   THR-107  6.7 6.6 5.7 5.6 43.3 48.4 31.4
 THR-107   LEU-108  4.7 4.1 15.9 -17.5 120.8 120.4 -7.9
 LEU-108   GLY-109  2.4 1.5 15.5 -4.4 51.5 46.7 25.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  14.7 14.8 4.4 -3.1 98.2 92.9 3.9
 GLY-209   LEU-210  12.1 11.8 -5.5 -0.6 68.1 63.0 13.2
 LEU-210   ILE-211  8.9 8.7 0.6 -6.1 141.5 156.0 15.6
 ILE-211   ASP-212  9.7 9.5 30.5 -22.7 141.5 134.5 -16.2
 ASP-212   SER-213  6.4 6.1 -13.3 8.1 108.0 117.5 -9.9
 SER-213   LYS-214  3.5 3.3 -17.2 23.8 74.7 72.1 14.0
 LYS-214   GLY-215  0.8 0.6 25.0 -15.7 48.3 47.9 30.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees