Formamidopyrimidine-Dna Glycosidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-131   ALA-132  1.4 1.5 -3.6 -6.5 44.6 46.1 59.3
 ALA-132   GLU-133  4.0 4.2 -163.9 168.8 39.0 52.2 -9.7
 GLU-133   LEU-134  5.8 5.4 -76.8 73.2 77.6 73.7 79.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-210   ILE-211  20.2 20.0 18.9 -25.6 140.3 137.8 65.0
 ILE-211   GLY-212  17.6 17.4 0.3 -7.2 91.2 88.2 2.1
 GLY-212   GLU-213  18.7 18.5 -6.0 15.1 72.8 77.4 -21.4
 GLU-213   ALA-214  22.4 22.2 3.6 11.9 168.5 167.4 -231.2
 ALA-214   VAL-215  21.8 22.0 -8.3 -91.6 58.0 65.7 715.5
 VAL-215   MET-216  20.2 21.5 -178.8 17.2 88.1 130.2 846.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees