DNA Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LYS-483   GLU-484  8.8 8.7 -70.0 79.3 159.6 145.8 63.9  GLU-484   HIS-485  6.7 6.6 5.3 -1.2 90.3 98.4 -16.5  HIS-485   LYS-486  6.5 6.4 -37.7 8.3 74.8 74.1 31.6 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLN-556   ILE-557  6.6 6.3 14.8 -12.9 5.4 7.8 21.7  ILE-557   ASN-558  7.5 7.1 28.1 -29.1 68.0 67.4 32.3  ASN-558   ARG-559  4.6 4.1 1.4 -9.9 96.2 90.0 33.5 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees