Lysyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-290   GLU-291  5.9 6.0 -1.5 12.3 160.9 158.3 300.2
 GLU-291   LEU-292  5.3 5.5 -11.2 6.6 105.5 105.8 -154.5
 LEU-292   THR-293  1.5 1.7 1.7 -1.6 76.4 75.4 -29.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-294   SER-295  5.4 5.2 2.2 -2.9 136.7 137.5 -73.6
 SER-295   LEU-296  2.2 2.0 -5.4 11.9 83.3 86.8 -38.5
 LEU-296   PHE-297  3.4 3.2 -19.4 11.1 58.6 54.2 179.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-317   ASP-318  15.4 15.6 4.2 -4.5 52.0 53.2 -52.2
 ASP-318   PHE-319  12.9 13.1 -12.1 9.8 52.5 55.2 75.3
 PHE-319   GLY-320  9.6 9.7 -11.1 0.8 110.7 110.4 44.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-393   ALA-394  13.4 13.6 0.5 1.0 66.0 66.7 -5.9
 ALA-394   GLU-395  10.4 10.6 0.5 -1.1 59.6 64.3 74.9
 GLU-395   VAL-396  11.7 11.8 -1.3 6.4 60.5 56.2 -71.7
 VAL-396   SER-397  11.8 11.8 6.2 -8.3 122.0 119.4 41.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-417   GLY-418  15.9 15.7 9.7 -10.4 92.8 88.9 50.9
 GLY-418   GLY-419  19.4 19.2 3.5 -0.1 32.8 30.7 0.5
 GLY-419   ARG-420  20.8 20.5 -3.2 -1.3 134.5 137.0 -97.2
 ARG-420   GLU-421  18.7 18.5 6.5 -5.2 74.8 79.7 183.6
 GLU-421   ILE-422  15.5 15.2 -2.5 0.8 62.9 65.8 39.5
 ILE-422   GLY-423  13.0 12.7 13.2 -8.7 59.8 64.5 80.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-452   ALA-453  17.0 17.1 -8.0 8.1 80.2 79.3 -19.6
 ALA-453   MET-454  13.8 13.8 5.2 -13.4 89.4 88.7 57.8
 MET-454   PHE-455  11.1 11.3 6.7 -0.8 150.1 152.2 -123.4
 PHE-455   TYR-456  11.3 11.3 15.6 -12.8 82.0 82.6 -27.4
 PHE-455   TYR-456  11.3 11.3 15.6 -12.8 82.0 82.6 -27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-455   TYR-456  11.3 11.3 15.6 -12.8 82.0 82.6 -27.4
 PHE-455   TYR-456  11.3 11.3 15.6 -12.8 82.0 82.6 -27.4
 TYR-456   ASP-457  8.5 8.6 -16.9 20.5 74.4 75.4 43.8
 ASP-457   GLU-458  9.1 9.4 -7.1 1.7 107.7 111.8 -42.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees