Mycoplasma Arthritidis Mitogen

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-62   VAL-63  5.2 5.1 0.8 -7.7 43.1 40.5 -95.4
 VAL-63   ASN-64  8.3 8.0 16.1 -9.6 28.8 34.5 90.7
 ASN-64   ASP-65  8.1 7.7 15.1 -11.2 60.3 57.0 75.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-66   ASN-67  4.8 4.7 16.1 -10.2 100.1 98.5 -11.1
 ASN-67   GLY-68  8.4 8.2 2.4 -15.1 132.7 131.4 83.5
 GLY-68   LEU-69  7.8 7.9 21.4 -12.7 63.5 64.0 53.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-123   GLN-124  11.7 11.7 -32.3 28.7 101.7 108.1 -28.0
 GLN-124   ASN-125  14.0 14.2 -1.2 10.7 158.1 152.5 64.5
 ASN-125   LYS-126  12.6 12.8 -3.2 8.1 126.0 135.1 61.5
 LYS-126   ASN-127  12.7 13.2 -4.1 -11.1 140.8 140.6 -105.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-138   THR-139  4.3 4.6 -12.5 15.4 104.6 104.1 43.5
 THR-139   LYS-140  6.3 6.2 -1.4 -0.4 84.6 83.4 -10.8
 LYS-140   GLU-141  9.3 9.3 -2.7 -0.2 13.9 14.1 28.6
 GLU-141   MET-142  8.9 9.0 -13.6 11.1 77.2 75.1 27.2
 MET-142   LYS-143  9.3 9.0 -2.5 1.4 106.5 110.1 -25.5
 LYS-143   ILE-144  12.5 12.0 -16.9 21.8 42.2 46.4 -55.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-199   LEU-200  17.6 17.4 12.1 22.1 103.0 110.4 -207.6
 LEU-200   LYS-201  14.5 14.5 -16.5 -16.4 103.9 112.0 -179.0
 LYS-201   THR-202  13.8 12.6 26.1 25.5 40.0 32.3 514.0
 THR-202   THR-203  12.3 12.1 -65.3 50.5 101.4 79.9 -84.0
 THR-203   SER-204  11.3 11.3 -23.3 -6.5 91.7 97.0 -65.7
 SER-204   ASP-205  7.6 7.5 -13.9 22.5 76.9 74.8 -23.9
 ASP-205   PHE-206  5.0 5.1 -15.6 14.8 7.8 8.3 0.7
 PHE-206   ALA-207  5.1 4.8 -6.8 9.0 72.9 72.1 7.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees