Ychf Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-2   PHE-3  12.6 12.4 156.9 -178.7 104.4 24.1 332.0
 PHE-3   LYS-4  9.1 10.5 134.0 -16.1 56.8 75.7 465.8
 LYS-4   CYS-5  8.1 8.4 10.6 7.3 43.9 44.6 44.1
 CYS-5   GLY-6  5.1 5.3 -5.2 7.0 122.6 126.1 86.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-41   GLY-42  13.4 13.7 -91.5 152.1 73.6 82.9 -79.3
 GLY-42   VAL-43  9.7 10.2 -18.0 13.9 134.2 136.6 -50.5
 VAL-43   VAL-44  8.5 8.9 8.9 -9.6 55.3 65.4 33.0
 VAL-44   PRO-45  6.5 6.8 2.7 4.6 45.2 45.7 55.1
 PRO-45   MET-46  4.5 4.7 19.6 -33.2 111.6 112.2 30.8
 MET-46   PRO-47  1.2 1.1 -24.4 28.5 123.3 120.7 -0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-67   MET-68  4.6 4.7 15.0 -21.2 29.1 28.5 -110.6
 MET-68   GLU-69  3.9 4.8 31.5 -15.7 58.7 51.1 231.7
 GLU-69   PHE-70  6.6 7.0 -2.3 2.0 159.2 159.2 -51.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-274   ALA-275  4.3 4.2 0.3 -8.6 100.3 99.2 46.8
 ALA-275   LEU-276  7.5 7.5 0.2 9.6 147.6 149.0 1.6
 LEU-276   LEU-277  7.2 7.1 1.8 -1.2 83.9 81.8 19.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees