Sugar Kinase Mj0406

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-14   ALA-15  6.2 6.0 17.7 -7.6 91.2 93.4 -15.1
 ALA-15   LEU-16  2.5 2.3 17.1 -17.4 29.8 28.3 -2.9
 LEU-16   ASP-17  0.8 0.6 -0.2 -3.7 88.4 88.3 73.7
 ASP-17   TYR-18  3.2 3.9 0.5 19.6 51.1 53.8 67.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-37   ARG-38  10.2 10.5 10.3 -52.1 117.2 94.1 77.7
 ARG-38   LYS-39  6.9 7.0 15.4 -2.2 42.6 43.8 58.5
 LYS-39   TYR-40  4.0 4.3 4.8 13.4 107.9 118.5 -14.0
 TYR-40   TYR-41  1.2 1.4 8.1 15.8 43.3 46.6 52.9
 TYR-41   GLY-42  2.8 2.6 6.6 -10.7 71.1 70.2 18.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-94   GLU-95  8.2 7.2 -2.8 -12.2 169.3 176.7 -65.1
 GLU-95   THR-96  7.3 6.3 -4.1 -0.6 97.4 105.4 18.2
 THR-96   PRO-97  5.0 4.1 3.2 -3.3 95.3 95.3 -1.3
 PRO-97   LYS-98  1.2 0.2 2.8 18.8 25.1 31.5 74.1
 LYS-98   ALA-99  2.0 2.9 -13.4 -9.1 82.4 87.4 35.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-113   LEU-114  6.2 7.0 -1.9 -4.0 132.9 137.8 -19.5
 LEU-114   TRP-115  4.1 4.7 2.1 -5.4 69.9 76.4 55.6
 TRP-115   GLY-116  1.4 2.1 10.6 -6.5 94.5 93.2 10.9
 GLY-116   ALA-117  3.3 2.1 -3.3 5.1 108.4 111.7 -0.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees