Molybdopterin-Guanine Dinucleotide Biosynthesis Protein B (Mobb)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-34   VAL-35  3.6 3.7 5.8 -9.8 79.4 75.5 31.1
 VAL-35   VAL-36  3.7 3.8 -2.9 6.3 25.1 27.3 -8.4
 VAL-36   LYS-37  4.5 4.6 -12.5 29.4 102.0 102.9 38.8
 LYS-37   ARG-38  8.3 8.4 -35.0 0.8 28.6 27.7 420.8
 ASP-52   SER-53  22.2 22.3 -63.2 2.7 89.2 76.8 -90.9
 SER-53   TRP-54  18.6 18.7 9.5 -6.9 101.8 108.7 21.7
 TRP-54   LYS-55  18.6 18.6 7.1 1.2 171.7 172.4 -105.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-85   ASP-86  6.5 6.8 -2.2 -1.3 99.9 94.2 -25.1
 ASP-86   TRP-87  7.5 7.7 8.4 0.0 40.8 40.6 71.3
 TRP-87   ILE-88  5.5 6.0 -8.8 10.2 68.9 73.8 -61.3
 ILE-88   TYR-89  2.4 2.5 4.5 -15.9 122.6 128.0 58.3
 TYR-89   GLU-90  4.2 4.1 2.5 -2.8 54.8 64.2 7.6
 GLU-90   ARG-91  6.4 7.0 6.4 -0.5 64.8 56.1 -2.5
 ARG-91   TYR-92  4.6 5.2 -21.6 10.6 50.6 60.2 149.2
 TYR-92   LEU-93  4.5 4.7 13.7 -1.3 157.1 164.8 -127.8
 LEU-93   SER-94  4.8 5.0 8.9 -1.2 110.3 114.0 -21.0
 SER-94   ASP-95  8.2 8.2 -10.4 27.0 50.5 48.1 -256.8
 ASP-95   TYR-96  10.1 10.0 -22.6 3.8 30.1 25.2 245.6
 TYR-96   ASP-97  7.6 7.5 -8.5 11.7 47.8 48.4 -66.1
 ASP-97   LEU-98  8.1 7.9 -16.7 6.0 75.2 80.9 46.5
 LEU-98   VAL-99  4.6 4.4 -8.0 -2.7 132.3 129.3 -59.6
 VAL-99   ILE-100  2.1 1.9 4.4 -11.6 120.0 117.3 50.8
 ILE-100   THR-101  2.4 2.5 -7.5 10.3 135.4 133.0 108.0
 THR-101   GLU-102  5.6 5.6 13.2 -1.4 120.4 127.1 -79.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees