Glial Cell-Derived Neurotrophic Factor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-72   CYS-73  7.4 6.6 -16.0 -0.8 69.1 75.8 18.7
 CYS-73   GLU-74  3.7 2.8 -35.8 25.7 74.1 80.4 4.0
 GLU-74   ALA-75  4.8 4.1 -21.7 6.7 62.3 59.6 26.8
 ALA-75   ALA-76  2.6 2.4 -2.7 29.6 132.9 118.6 43.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-99   GLN-100  4.7 4.0 96.8 -9.8 17.9 11.4 298.1
 GLN-100   ALA-101  4.0 3.3 0.3 -4.6 86.7 82.3 -11.4
 ALA-101   CYS-102  0.5 1.2 2.8 -10.2 99.3 95.3 0.2
 CYS-102   CYS-103  3.3 3.1 7.8 0.7 58.3 62.3 15.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees