Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-87   PRO-88  2.1 1.8 23.1 -10.6 110.5 110.2 -67.1
 PRO-88   GLU-89  2.5 2.2 -11.6 -1.7 23.9 29.2 141.4
 GLU-89   ILE-90  4.3 4.0 -31.0 29.0 78.2 82.6 39.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-145   ASP-146  9.7 9.7 0.9 8.8 91.7 89.7 -6.1
 ASP-146   ASP-147  11.0 11.2 2.0 7.2 56.5 57.5 88.9
 ASP-147   GLY-148  9.7 10.3 -19.3 13.0 153.7 143.9 -83.0
 GLY-148   VAL-149  7.5 7.7 27.8 -33.9 37.5 33.2 -32.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-183   THR-184  6.5 6.3 -14.5 1.5 58.7 55.0 68.7
 THR-184   ASP-185  8.0 7.9 2.7 -13.6 156.2 154.1 128.9
 ASP-185   VAL-186  9.5 9.2 -10.6 18.4 45.5 43.2 -96.8
 VAL-186   ASP-187  7.8 8.0 -5.0 16.0 32.3 32.4 -113.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-188   PRO-189  6.9 7.1 9.6 -20.1 127.1 120.2 92.6
 PRO-189   ALA-190  6.0 6.1 2.3 -8.3 81.8 89.9 -5.0
 ALA-190   LEU-191  4.1 4.0 15.4 -12.7 139.3 146.8 -52.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees