Orotidine 5'-Phosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-27   ILE-28  5.6 5.7 7.8 -8.0 52.3 54.1 26.0
 ILE-28   LYS-29  2.9 2.8 4.5 -1.9 111.3 111.5 9.1
 LYS-29   VAL-30  0.8 0.9 -1.3 7.7 137.2 138.8 35.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-141   ARG-142  15.3 15.0 33.2 -31.1 33.4 17.0 53.9
 ARG-142   PRO-143  15.9 14.8 -22.0 5.1 103.7 118.0 7.6
 PRO-143   GLU-144  14.5 13.8 -18.8 12.1 155.3 166.1 -78.5
 GLU-144   ARG-145  13.9 14.1 -17.7 -3.4 96.2 100.1 -29.3
 ARG-145   ILE-146  11.1 11.5 -3.8 -2.3 82.5 77.5 25.9
 ILE-146   GLY-147  9.0 9.0 5.7 0.5 28.0 36.0 50.5
 GLY-147   TYR-148  9.5 9.6 2.0 -3.5 51.4 44.1 -12.1
 TYR-148   ILE-149  8.7 8.8 0.6 2.5 99.0 99.3 2.5
 ILE-149   ARG-150  5.6 5.7 -3.1 -0.1 102.9 98.0 -5.6
 ARG-150   ASP-151  4.7 4.9 2.6 -3.4 14.7 18.8 -5.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-156   ILE-157  7.9 7.6 11.5 7.8 41.5 39.8 90.5
 ILE-157   LYS-158  4.9 4.5 -4.0 3.9 113.5 114.3 -25.8
 LYS-158   ILE-159  4.1 3.8 -1.0 -0.2 97.8 95.6 -3.2
 ILE-159   LEU-160  3.0 3.0 -2.7 -3.0 154.7 156.5 -38.3
 LEU-160   ALA-161  3.7 3.6 3.2 0.2 94.9 91.3 -11.5
 ALA-161   PRO-162  7.1 7.0 -6.8 9.1 147.2 151.1 27.9
 PRO-162   GLY-163  8.9 8.5 2.3 24.8 107.9 104.9 0.3
 GLY-163   ILE-164  12.7 12.3 -3.0 -20.6 64.2 93.8 113.8
 ILE-164   GLY-165  14.1 13.2 -12.5 158.8 124.7 153.7 1022.6
 GLY-165   ALA-166  17.8 15.9 101.1 32.8 54.6 76.9 -2320.1
 ALA-166   GLN-167  19.2 16.7 -43.3 -6.8 69.3 40.9 262.0
 GLN-167   GLY-168  22.0 16.9 -143.2 154.5 71.4 47.9 9.3
 GLY-168   GLY-169  22.6 18.7 -145.8 -160.2 18.5 47.1 -319.8
 GLY-169   LYS-170  20.9 16.2 165.6 -36.5 110.0 73.3 1320.1
 LYS-170   ALA-171  18.2 17.1 175.0 7.1 83.2 100.8 -284.6
 ALA-171   LYS-172  15.4 14.8 -5.8 5.1 51.5 37.5 28.7
 LYS-172   ASP-173  16.8 16.9 -1.4 -3.7 20.4 27.4 52.1
 ASP-173   ALA-174  16.5 16.3 1.8 -1.5 97.7 100.1 -28.2
 ALA-174   VAL-175  13.0 12.5 -3.9 -1.8 83.5 74.1 2.4
 VAL-175   LYS-176  12.3 12.4 3.2 5.4 157.3 158.0 -89.9
 LYS-176   ALA-177  14.2 14.7 -10.7 7.7 42.8 46.0 48.5
 ALA-177   GLY-178  12.2 12.2 -5.0 -10.5 87.8 82.8 -3.7
 GLY-178   ALA-179  8.9 9.4 12.7 8.1 31.0 39.0 166.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees