Uracil-Dna Glycosylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-161   ARG-162  9.2 9.0 7.3 2.2 6.4 6.2 125.3
 ARG-162   PRO-163  8.6 8.3 -1.7 -4.3 109.4 111.4 -30.0
 PRO-163   VAL-164  9.6 9.0 0.5 4.5 100.9 99.9 -130.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-196   LYS-197  2.9 3.0 -5.5 5.5 106.7 105.2 -6.6
 LYS-197   GLN-198  6.1 6.2 -6.9 2.9 118.1 118.0 -16.0
 GLN-198   GLY-199  5.9 5.8 7.4 -12.1 20.3 25.2 -89.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-230   SER-231  7.1 7.2 -0.2 3.2 20.2 20.7 -30.7
 SER-231   TRP-232  6.9 7.0 -6.6 4.8 78.3 80.3 52.8
 TRP-232   LEU-233  5.2 5.2 0.3 -2.1 72.1 71.1 2.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-287   ASN-288  11.3 11.5 0.5 -1.7 88.7 86.8 -58.6
 ASN-288   GLU-289  12.4 12.6 -0.7 8.1 124.0 126.8 31.5
 GLU-289   LEU-290  15.7 15.8 -7.7 11.0 166.0 159.3 54.8
 LEU-290   LEU-291  13.8 13.7 -8.9 14.1 104.5 102.1 -22.2
 LEU-291   GLN-292  11.8 11.8 9.3 9.0 84.3 74.3 57.1
 GLN-292   LYS-293  15.3 15.4 -18.8 12.3 145.4 170.7 -121.4
 LYS-293   SER-294  16.7 15.5 0.4 11.6 39.2 57.7 149.3
 SER-294   GLY-295  14.0 12.3 -9.2 -5.1 82.0 85.6 -24.6
 GLY-295   LYS-296  15.5 14.5 19.5 -25.7 123.4 134.3 -8.9
 LYS-296   LYS-297  12.5 12.4 -3.2 1.2 11.9 19.6 63.6
 LYS-297   PRO-298  12.7 13.0 10.7 -1.7 115.8 116.3 -119.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees