Gephyrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-364   LEU-365  6.3 6.0 -19.9 13.2 60.8 66.4 12.1
 LEU-365   PRO-366  3.9 4.2 7.8 -5.0 41.9 33.6 42.3
 PRO-366   PRO-367  1.0 1.7 -9.2 -7.8 93.8 97.6 -20.7
 PRO-367   PHE-368  3.8 2.5 25.1 -15.0 61.8 67.9 -4.8
 PHE-368   PRO-369  4.7 3.7 9.7 -5.0 50.1 52.3 43.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-459   ILE-460  2.3 1.5 1.0 -25.0 57.7 46.0 -31.9
 ILE-460   GLY-461  2.7 1.8 12.3 -24.9 116.1 105.2 39.0
 GLY-461   HIS-462  3.9 4.2 26.8 -16.9 114.5 128.1 -6.4
 HIS-462   ASP-463  3.7 4.3 4.3 0.1 62.9 67.8 -4.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees