D-Ribose-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-101   ALA-102  6.0 5.6 -3.7 -11.0 45.6 47.3 20.1
 ALA-102   SER-103  3.4 3.2 2.2 -19.0 133.3 121.7 16.9
 SER-103   ASP-104  1.9 0.6 31.8 -3.1 67.1 63.8 25.8
 ASP-104   ASN-105  3.7 3.1 -7.7 -7.9 58.7 58.7 22.5
 ASN-105   VAL-106  4.8 5.1 4.8 0.3 96.0 92.6 -8.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-232   ILE-233  4.7 4.8 -16.1 25.0 55.3 54.1 7.6
 ILE-233   ALA-234  2.9 3.0 -11.5 33.5 68.8 75.3 -6.3
 ALA-234   GLN-235  1.2 1.7 -18.6 -29.9 39.0 21.2 75.9
 GLN-235   LEU-236  2.8 3.2 18.7 -5.7 71.8 80.9 -1.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-262   VAL-263  6.2 5.0 7.6 -4.4 140.6 145.6 -8.5
 VAL-263   ASP-264  6.2 5.3 4.0 -12.2 142.8 132.9 11.7
 ASP-264   LEU-265  6.6 5.2 -6.9 16.7 56.1 50.3 -20.5
 LEU-265   LYS-266  3.9 2.9 -3.5 -28.2 25.6 33.1 52.3
 LYS-266   LEU-267  4.4 3.7 -19.6 3.2 55.9 53.1 29.9
 LEU-267   VAL-268  4.4 4.1 -8.1 2.0 42.2 31.0 5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees