DNA Primase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-243   GLN-244  9.6 9.9 -20.6 9.4 70.6 75.3 103.6
 GLN-244   LEU-245  7.9 8.3 0.2 -0.7 156.5 155.3 6.8
 LEU-245   TYR-246  5.6 6.0 0.8 -1.4 114.2 113.8 -1.2
 TYR-246   GLY-247  6.6 6.9 1.5 -0.2 102.9 102.0 5.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-276   GLY-277  9.7 9.6 -0.4 1.6 48.7 48.3 -4.3
 GLY-277   ILE-278  11.0 10.8 -1.0 -1.5 57.3 56.2 11.6
 ILE-278   ASN-279  7.7 7.5 -2.5 1.4 41.8 44.7 34.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-282   ALA-283  1.9 2.2 9.9 -14.6 112.7 113.2 -34.4
 ALA-283   SER-284  5.3 5.5 -13.1 24.8 135.0 135.5 82.0
 SER-284   LEU-285  8.5 8.6 13.2 21.6 106.1 100.8 -67.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees