60-Kda Ss-A/ro Ribonucleoprotein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-133   ASP-134  17.8 18.3 8.3 -22.1 104.2 102.0 11.4
 ASP-134   LEU-135  21.0 21.5 18.8 -5.4 48.4 57.9 39.7
 TRP-144   GLY-145  11.1 12.4 -33.8 13.9 147.1 144.0 -108.3
 GLY-145   ARG-146  11.2 12.5 3.7 -12.6 100.5 98.5 11.5
 ARG-146   ALA-147  9.2 9.9 9.5 2.8 143.9 142.8 -91.6
 ALA-147   LEU-148  11.6 11.8 -2.3 1.0 29.4 31.7 17.7
 LEU-148   ARG-149  10.4 10.6 -6.4 8.6 86.5 91.4 7.0
 ARG-149   LYS-150  6.7 7.0 -2.2 0.4 76.9 78.7 -8.3
 LYS-150   ALA-151  7.7 7.5 -4.9 5.9 16.8 13.6 4.9
 ALA-151   VAL-152  9.4 9.0 -4.0 7.3 50.6 55.3 -12.7
 VAL-152   SER-153  6.2 5.9 -4.5 0.5 95.0 97.4 11.8
 SER-153   ASP-154  4.4 3.8 -2.9 -4.7 61.2 63.2 87.1
 ASP-154   TRP-155  7.9 7.0 14.0 -3.0 173.3 172.8 -98.0
 TRP-155   TYR-156  6.9 6.0 4.6 -11.7 108.7 107.3 23.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-277   LEU-278  4.7 4.2 17.7 3.0 54.8 55.4 47.2
 LEU-278   THR-279  7.0 6.7 -11.8 -2.3 79.7 88.8 -1.4
 THR-279   ALA-280  7.3 7.2 -2.8 10.8 110.9 112.1 20.5
 ALA-280   LEU-281  4.4 4.4 -5.2 1.2 179.4 176.6 -28.3
 LEU-281   LEU-282  4.3 4.0 -3.1 1.2 111.3 115.2 -12.6
 LEU-282   ARG-283  7.9 7.7 1.4 -9.0 90.1 88.7 -30.3
 ARG-283   ASN-284  8.2 8.3 19.4 -22.8 50.6 58.8 -38.7
 ASN-284   LEU-285  6.0 6.4 18.5 -8.9 10.5 14.7 77.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees