Prefoldin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-41   LEU-42  5.0 5.1 -0.6 2.4 108.9 106.1 -9.5
 LEU-42   GLU-43  4.1 4.2 -3.8 2.3 41.5 39.6 -5.4
 GLU-43   GLU-44  4.2 4.1 -8.8 4.3 77.4 78.9 22.8
 GLU-44   LEU-45  0.6 0.7 4.1 -2.3 48.7 46.5 13.2
 LEU-45   SER-46  1.2 1.0 -4.5 17.9 85.5 83.8 -27.8
 SER-46   ARG-47  4.6 4.3 -8.5 9.1 39.2 49.4 -5.3
 ARG-47   ALA-48  4.9 4.8 -16.8 10.3 99.7 109.4 27.8
 ALA-48   ALA-49  5.9 6.0 -1.0 -3.4 121.2 126.2 67.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-71   GLU-72  1.8 1.8 6.0 -8.4 130.1 134.0 14.3
 GLU-72   GLU-73  3.8 3.5 -1.1 -1.6 78.9 78.8 -25.1
 GLU-73   LEU-74  4.2 4.3 1.9 0.9 43.9 43.1 33.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees