Serotransferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-306   PRO-307  4.2 4.0 -10.7 1.5 127.3 131.8 -112.3
 PRO-307   ARG-308  7.6 7.4 -7.9 19.3 174.1 169.3 181.9
 ARG-308   MET-309  6.6 6.2 -4.1 -12.8 117.4 119.3 -185.7
 MET-309   ASP-310  5.6 5.4 3.2 -3.8 64.1 69.5 -16.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-341   VAL-342  3.4 3.7 -4.6 1.1 18.2 17.8 31.4
 VAL-342   LYS-343  4.2 4.4 12.2 -11.7 105.7 103.6 87.7
 LYS-343   TRP-344  2.4 2.5 3.5 -7.2 129.5 128.5 13.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-675   PHE-676  5.0 5.2 1.6 -6.4 61.4 62.5 -66.2
 PHE-676   ARG-677  3.6 4.1 -8.5 17.4 64.8 62.4 -97.6
 ARG-677   ARG-678  6.2 6.4 -15.0 -7.9 89.1 92.7 40.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees