Nadp-Dependent Malic Enzyme
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-237
MET-238
9.5
9.4
9.1
-3.5
94.8
92.9
35.3
MET-238
ASN-239
6.1
6.0
2.6
-1.7
34.4
26.5
-7.2
ASN-239
CYS-240
5.5
6.0
2.3
-13.3
54.7
56.0
-46.1
CYS-240
LEU-241
5.7
6.0
-9.7
10.8
92.0
91.4
13.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-252
PHE-253
15.5
15.7
1.6
-6.1
112.8
108.5
49.9
PHE-253
ARG-254
15.3
15.4
8.9
-6.7
144.2
150.8
-0.9
ARG-254
LEU-255
14.1
14.4
2.5
2.3
80.4
82.6
-27.2
LEU-255
LEU-256
11.4
11.8
-12.9
11.0
118.2
115.3
28.2
LEU-256
ASN-257
10.3
10.3
3.3
-13.3
128.5
127.3
23.2
ASN-257
LYS-258
10.8
10.7
13.5
-5.6
123.1
137.3
-70.2
LYS-258
TYR-259
8.4
8.8
0.5
3.1
69.0
72.8
11.2
TYR-259
ARG-260
5.6
5.7
-7.2
4.7
129.8
128.4
-4.7
ARG-260
ASN-261
5.9
5.6
4.6
3.2
106.3
107.2
13.5
ASN-261
GLN-262
5.7
5.3
5.1
-4.3
107.4
108.5
-0.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-269
ILE-270
15.3
15.0
-18.9
17.7
72.4
75.1
13.1
ILE-270
GLN-271
15.5
15.3
-14.4
10.3
104.0
110.5
-9.9
GLN-271
GLY-272
12.8
12.7
4.9
0.6
9.3
10.0
51.4
GLY-272
THR-273
11.9
11.9
4.4
8.4
56.5
63.8
56.9
THR-273
ALA-274
15.5
15.6
-16.9
7.3
84.4
81.2
52.0
ALA-274
SER-275
16.4
16.3
-4.6
3.7
136.1
131.4
-54.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TYR-448
PRO-449
20.6
21.1
3.2
-3.4
6.5
8.5
-2.4
PRO-449
GLY-450
21.6
21.9
-2.7
5.3
119.5
114.8
3.2
GLY-450
GLN-451
18.8
18.8
-2.5
1.6
143.5
141.7
34.1
GLN-451
GLY-452
17.8
18.0
25.4
-6.6
35.0
38.2
218.9
GLY-452
ASN-453
17.8
17.4
-15.2
41.5
127.5
117.1
104.4
ASN-453
ASN-454
15.5
14.8
-21.7
-10.1
109.8
128.6
-149.3
ASN-454
SER-455
12.6
12.6
13.3
-12.0
119.6
109.0
21.4
SER-455
TYR-456
10.4
9.9
8.7
1.6
117.1
115.9
-122.2
TYR-456
VAL-457
9.7
9.4
-11.0
13.1
137.8
138.7
51.8
VAL-457
PHE-458
8.6
8.4
-3.5
2.4
119.2
114.8
-58.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-540
ARG-541
7.9
8.3
-5.3
1.5
47.4
49.2
-2.5
ARG-541
SER-542
7.9
8.2
0.4
-7.8
72.0
74.9
-19.4
SER-542
GLN-543
10.8
11.1
8.1
-3.4
53.9
47.3
4.8
GLN-543
MET-544
8.5
8.9
-1.4
6.4
67.2
67.6
17.9
MET-544
TYR-545
6.7
6.9
-3.3
3.0
63.4
66.7
57.1
TYR-545
SER-546
8.8
9.0
8.6
-16.7
174.5
174.9
95.6
SER-546
THR-547
10.1
10.0
-5.2
4.8
78.9
78.9
-114.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees