Calmodulin Cmd-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-19   PHE-20  5.6 4.0 -2.3 -3.4 119.9 113.8 -4.0
 PHE-20   ASP-21  4.0 2.3 27.1 -25.1 100.0 73.1 6.2
 ASP-21   LYS-22  0.4 1.7 -14.4 -6.9 19.3 32.4 36.0
 LYS-22   ASP-23  2.1 2.6 1.5 27.3 123.1 89.0 -10.5
 ASP-23   GLY-24  3.8 6.3 -19.8 10.5 99.0 106.7 2.5
 GLY-24   ASP-25  4.3 7.0 -5.1 -9.5 119.4 148.2 -16.7
 ASP-25   GLY-26  7.0 8.0 28.0 -29.2 42.5 45.4 6.2
 GLY-26   THR-27  6.1 6.7 -7.7 3.2 148.6 131.0 -4.9
 THR-27   ILE-28  3.9 3.5 5.1 -18.0 107.1 120.6 4.6
 ILE-28   THR-29  1.6 1.0 30.0 27.1 58.0 43.1 68.0
 THR-29   THR-30  5.3 4.3 -4.1 -2.0 91.2 112.2 0.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-59   GLY-60  5.3 3.9 -12.2 -9.6 91.8 106.2 -0.3
 GLY-60   ASN-61  4.9 4.7 -1.8 -7.9 122.5 133.0 -2.8
 ASN-61   GLY-62  7.5 6.4 3.5 -13.1 48.7 25.0 -5.0
 GLY-62   THR-63  6.6 5.8 18.7 -4.5 36.6 40.4 21.2
 THR-63   ILE-64  4.1 3.1 -22.8 -23.7 77.0 66.6 20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees