Vitamin D-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-131   GLU-132  4.8 4.1 0.3 -1.2 51.9 59.8 -8.3
 GLU-132   PHE-133  5.3 5.5 -5.8 -2.5 62.3 55.3 37.4
 PHE-133   PRO-134  5.5 5.8 -7.3 3.6 56.2 53.4 9.8
 PRO-134   THR-135  2.9 3.1 -3.3 14.0 46.8 42.8 -77.7
 THR-135   TYR-136  4.4 4.4 -20.0 5.2 73.1 73.5 37.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-211   LEU-212  10.9 11.2 0.2 2.8 58.4 63.8 1.1
 LEU-212   THR-213  9.8 10.2 -4.7 0.8 55.1 50.7 11.6
 THR-213   THR-214  8.6 9.0 -7.3 11.6 74.7 76.0 28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees