Tumor Necrosis Factor Receptor Superfamily Member 4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-114   PRO-115  3.8 4.1 16.6 1.2 55.6 57.6 21.0
 PRO-115   LEU-116  6.2 6.6 -26.0 10.7 68.0 60.3 21.0
 LEU-116   ASP-117  9.9 10.0 -122.4 16.0 126.8 139.6 -489.0
 ASP-117   SER-118  12.0 13.2 -48.0 -46.9 116.1 118.9 -364.6
 SER-118   TYR-119  12.8 12.8 -138.1 20.1 169.0 159.9 1301.8
 TYR-119   LYS-120  12.9 13.6 -27.1 -4.3 109.5 118.1 -89.0
 LYS-120   PRO-121  9.7 10.4 83.3 4.9 140.0 137.6 -354.7
 PRO-121   GLY-122  7.4 8.3 -15.2 3.5 85.3 86.5 44.2
 PRO-121   GLY-122  7.4 8.3 -15.2 3.5 85.3 86.5 44.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-121   GLY-122  7.4 8.3 -15.2 3.5 85.3 86.5 44.2
 PRO-121   GLY-122  7.4 8.3 -15.2 3.5 85.3 86.5 44.2
 GLY-122   VAL-123  4.4 5.2 -9.8 13.7 82.2 86.6 11.6
 VAL-123   ASP-124  7.1 7.9 2.3 -8.8 32.2 26.4 -28.7
 ASP-124   CYS-125  8.9 9.1 10.8 -10.3 133.8 130.5 -34.8
 ASP-124   CYS-125  8.9 9.1 10.8 -10.3 133.8 130.5 -34.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-124   CYS-125  8.9 9.1 10.8 -10.3 133.8 130.5 -34.8
 ASP-124   CYS-125  8.9 9.1 10.8 -10.3 133.8 130.5 -34.8
 CYS-125   ALA-126  6.5 6.7 -6.4 3.3 23.5 23.5 36.4
 ALA-126   PRO-127  6.8 6.9 1.3 0.2 126.5 121.4 32.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-133   SER-134  4.6 4.8 -9.1 0.5 23.0 21.9 57.9
 SER-134   PRO-135  4.5 4.7 1.5 -8.0 119.8 118.4 2.0
 PRO-135   GLY-136  6.4 6.3 13.9 -5.2 138.3 145.1 -40.8
 GLY-136   ASP-137  3.5 3.5 -0.3 -7.1 38.7 36.2 11.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees