Glycoprotein B

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-657   GLN-658  78.9 78.7 3.9 -7.7 92.2 89.3 4.6
 GLN-658   LEU-659  75.1 75.0 15.9 -25.9 157.4 155.7 416.6
 LEU-659   SER-660  73.0 72.7 1.0 7.8 86.7 88.2 29.3
 SER-660   ARG-661  69.5 69.1 14.6 -11.2 119.1 118.8 -146.5
 ARG-661   ALA-662  67.1 67.1 14.4 -1.2 168.4 169.1 -628.1
 ALA-662   ASP-663  66.8 67.1 -3.3 0.0 60.2 61.4 44.1
 ASP-663   ILE-664  70.4 70.6 5.1 0.5 107.9 103.7 -96.5
 ILE-664   THR-665  69.6 69.5 0.1 -10.5 124.5 128.6 228.3
 THR-665   THR-666  67.7 67.4 -0.6 10.2 118.7 117.0 156.6
 THR-666   VAL-667  64.3 64.1 -1.6 2.6 52.1 52.5 -117.0
 VAL-667   SER-668  62.9 62.6 6.6 -6.8 54.6 53.7 16.0
 SER-668   THR-669  59.4 59.2 4.0 -3.6 87.0 86.0 95.4
 THR-669   PHE-670  58.5 58.2 -5.5 5.0 84.3 83.6 -99.0
 PHE-670   ILE-671  54.8 54.6 7.4 -12.6 155.5 158.2 216.0
 ILE-671   ASP-672  52.7 52.4 -0.1 7.1 85.6 84.7 -43.1
 ASP-672   LEU-673  50.4 50.1 1.7 -5.9 103.1 100.2 67.4
 LEU-673   ASN-674  46.6 46.3 -17.5 17.4 86.1 87.5 -78.4
 ASN-674   ILE-675  44.7 44.5 3.4 -4.7 99.3 97.0 1.5
 ILE-675   THR-676  41.0 40.8 2.2 -4.4 91.8 91.8 -35.7
 THR-676   MET-677  39.0 38.8 -1.0 3.7 96.0 94.7 -75.7
 MET-677   LEU-678  35.5 35.3 4.0 -6.4 145.6 148.0 110.6
 LEU-678   GLU-679  32.5 32.4 0.8 0.7 79.7 81.5 -1.2
 GLU-679   ASP-680  32.1 31.9 -1.4 2.4 85.5 84.5 -86.8
 ASP-680   HIS-681  29.2 29.0 1.0 -4.5 158.6 160.1 96.4
 HIS-681   GLU-682  27.0 26.9 6.1 -6.4 81.8 82.8 -27.4
 GLU-682   PHE-683  24.7 24.5 3.0 -2.9 142.4 143.5 -21.0
 PHE-683   VAL-684  21.5 21.3 0.3 -3.3 97.6 95.8 -41.0
 VAL-684   PRO-685  21.0 20.8 -6.0 4.5 68.7 66.7 29.7
 PRO-685   LEU-686  17.7 17.6 9.4 -4.9 173.4 170.7 -28.5
 LEU-686   GLU-687  16.7 16.6 -3.6 3.9 67.7 65.6 25.3
 GLU-687   VAL-688  13.8 13.8 7.0 -10.1 173.7 173.1 155.5
 VAL-688   TYR-689  13.1 13.0 6.6 -7.5 107.4 109.7 11.2

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees