Protein Ybgc

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-50   MET-51  7.4 7.6 0.3 -1.0 90.5 88.1 4.8
 MET-51   ALA-52  10.7 10.9 1.4 -5.2 71.9 73.4 0.8
 ALA-52   GLU-53  11.7 12.0 8.6 2.4 134.6 139.0 -122.6
 GLU-53   ARG-54  11.9 12.0 -13.4 8.1 37.0 43.1 61.3
 ARG-54   VAL-55  13.2 13.5 -2.9 -8.7 38.9 36.8 156.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-57   VAL-58  6.9 7.2 2.6 -0.3 68.3 65.9 -7.1
 VAL-58   VAL-59  8.8 9.0 5.8 -2.6 44.8 43.9 30.9
 VAL-59   ARG-60  8.3 8.3 2.5 2.2 26.5 27.6 40.9
 ARG-60   LYS-61  8.2 8.1 1.1 -2.1 51.4 49.2 3.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-81   ILE-82  8.5 8.9 0.3 -7.7 127.5 122.1 61.2
 ILE-82   THR-83  5.8 6.3 11.1 -36.0 134.5 136.6 263.7
 THR-83   SER-84  7.5 7.6 67.2 -39.3 110.1 123.4 -183.0
 SER-84   MET-85  6.3 5.8 -5.8 -22.4 109.1 120.2 -130.9
 MET-85   ARG-86  6.1 6.0 -19.9 -37.3 44.3 54.2 470.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-91   PHE-92  2.4 2.3 -11.0 -2.5 43.2 49.9 105.4
 PHE-92   THR-93  4.9 5.0 5.7 -4.8 61.9 61.2 -2.9
 THR-93   GLN-94  8.6 8.7 1.7 -4.1 140.2 140.9 27.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-109   LEU-110  6.2 6.2 3.4 -5.7 96.8 95.7 15.7
 LEU-110   VAL-111  3.5 3.5 0.3 -3.6 55.1 54.1 -4.2
 VAL-111   VAL-112  4.2 4.3 0.7 -3.7 101.0 94.9 6.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees