Elongation Factor 1-Alpha

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-87   ILE-88  5.3 5.3 2.5 -1.7 94.4 99.2 -20.3
 ILE-88   ILE-89  4.4 4.9 -14.0 19.9 149.7 157.3 21.3
 ILE-89   ASP-90  7.3 7.3 174.7 -123.4 84.5 68.7 68.2
 ASP-90   ALA-91  9.7 9.3 33.5 -61.9 132.4 138.9 169.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-104   ALA-105  18.1 18.3 -5.1 5.7 72.6 65.8 5.9
 ALA-105   SER-106  14.8 15.2 -3.5 25.5 138.7 137.7 122.1
 SER-106   GLN-107  13.3 13.5 -61.1 69.1 140.2 138.0 126.8
 GLN-107   ALA-108  14.6 15.0 -30.2 -1.7 145.3 143.3 -264.4
 ALA-108   ASP-109  13.4 13.3 18.9 -2.6 43.8 43.1 102.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-221   LEU-222  9.8 10.2 -0.1 -3.1 125.0 128.8 -45.0
 LEU-222   GLU-223  11.5 11.7 18.3 -24.3 87.5 81.9 -0.5
 GLU-223   LEU-224  15.2 15.3 5.3 9.3 19.0 18.3 133.4
 LEU-224   PRO-225  16.9 16.7 -11.9 16.1 88.6 84.9 -16.3
 PRO-225   PRO-226  19.8 19.0 -39.6 -2.2 84.6 84.2 106.5
 PRO-226   LYS-227  23.4 22.4 13.6 13.1 32.1 50.1 208.0
 LYS-227   PRO-228  24.8 25.8 0.3 -41.5 71.7 106.8 29.1
 PRO-228   VAL-229  27.7 27.8 85.7 -12.7 120.0 109.8 -295.7
 VAL-229   ASP-230  30.1 30.7 0.7 6.9 149.5 140.3 -54.3
 ASP-230   LYS-231  29.6 30.5 -10.0 6.6 94.9 104.9 44.3
 LYS-231   PRO-232  30.4 31.1 -5.4 3.6 100.9 107.4 -10.8
 PRO-232   LEU-233  34.0 34.6 5.2 -10.1 25.7 27.8 -18.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees