Vacuolar Protein Sorting Protein 29

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-83   LEU-84  4.7 4.5 -1.5 -2.8 31.4 26.7 6.1
 LEU-84   ILE-85  6.0 5.8 6.1 -9.3 136.5 136.4 -9.2
 ILE-85   HIS-86  3.9 3.9 -1.3 0.6 38.1 38.7 -3.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-104   GLN-105  5.9 3.8 6.7 -19.1 82.0 61.9 -4.3
 GLN-105   PHE-106  5.0 1.3 25.4 -20.5 115.2 105.6 13.1
 PHE-106   ASP-107  1.5 3.8 12.6 -147.7 173.7 163.2 190.8
 ASP-107   VAL-108  1.7 2.6 7.3 -19.0 100.9 101.6 -6.7
 VAL-108   ASP-109  3.1 3.2 -2.1 1.8 74.3 74.6 -6.4
 ASP-109   ILE-110  6.7 6.8 -9.7 6.1 141.2 142.8 -6.6
 ILE-110   LEU-111  8.2 8.4 -1.1 -4.9 141.0 143.8 6.8
 LEU-111   ILE-112  6.7 6.9 6.7 -18.6 43.9 39.7 -6.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees