Tryptophanyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-110   LYS-111  16.7 17.0 12.4 -9.9 35.1 29.9 35.4
 LYS-111   ILE-112  17.1 17.6 -8.6 6.0 88.5 90.6 1.6
 ILE-112   ASP-113  14.6 14.9 6.2 -12.7 81.8 80.7 -14.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-115   LEU-116  15.8 15.6 10.0 -5.9 98.3 98.6 63.4
 LEU-116   ILE-117  12.3 12.4 -0.5 -2.8 34.8 37.2 43.8
 ILE-117   ASN-118  12.3 12.2 -3.8 6.0 97.7 102.8 21.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-143   ASN-144  7.1 7.8 -9.0 -7.1 47.9 54.4 196.1
 ASN-144   GLN-145  7.2 7.6 1.8 5.9 118.7 126.0 -131.6
 GLN-145   VAL-146  4.8 5.4 6.3 -3.2 55.4 55.6 -5.1
 VAL-146   LEU-147  2.9 3.4 -10.2 11.5 87.4 92.0 -12.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-168   MET-169  18.2 18.1 66.2 -55.2 51.8 39.2 165.7
 MET-169   HIS-170  15.3 15.4 -14.8 23.7 64.2 65.8 -50.1
 HIS-170   VAL-171  14.0 14.4 -14.2 5.2 121.6 125.8 -82.2
 VAL-171   GLY-172  11.8 11.8 15.5 -11.9 15.0 20.4 51.8
 GLY-172   HIS-173  13.7 13.9 -1.9 1.4 129.3 136.0 20.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-181   TRP-182  2.5 2.9 -0.1 2.9 113.2 109.6 50.0
 TRP-182   LEU-183  1.1 0.8 2.4 -1.9 11.0 12.6 -8.4
 LEU-183   GLN-184  0.6 0.7 1.7 -7.2 80.8 76.2 -26.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-188   VAL-189  7.0 6.4 -13.1 12.8 51.5 51.7 -19.5
 VAL-189   PRO-190  6.5 6.3 19.8 -15.1 52.5 55.8 102.3
 PRO-190   LEU-191  9.2 9.1 4.4 0.9 77.9 78.6 60.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-226   PHE-227  6.4 6.0 -30.6 15.6 170.6 163.6 -230.6
 PHE-227   ASP-228  7.3 7.5 7.9 -12.4 81.5 86.3 17.9
 ASP-228   ILE-229  9.6 10.0 8.2 5.8 72.9 81.2 80.2
 ILE-229   ASN-230  12.9 13.5 -7.7 -3.7 145.9 156.0 -114.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-305   LEU-306  8.8 8.7 -1.7 -7.8 70.8 71.2 56.2
 LEU-306   ILE-307  7.4 7.5 -9.0 17.3 34.2 32.3 -45.1
 ILE-307   PRO-308  10.0 10.2 -1.8 -3.9 57.9 50.8 50.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-311   ASP-312  18.0 18.1 12.0 -13.7 101.2 95.1 16.4
 ASP-312   GLN-313  21.2 20.8 23.7 -23.7 110.9 112.9 26.9
 GLN-313   ASP-314  19.7 19.1 -8.0 4.1 8.5 5.1 67.9
 ASP-314   PRO-315  19.1 18.9 3.2 6.9 124.0 124.4 -89.1
 PRO-315   TYR-316  22.3 22.2 -6.8 9.0 90.7 72.0 -82.5
 TYR-316   PHE-317  21.6 21.1 -6.0 1.0 54.8 40.6 96.7
 PHE-317   ARG-318  18.4 18.0 -13.7 -10.8 19.1 33.4 297.3
 ARG-318   MET-319  20.1 19.8 4.6 -7.3 121.2 121.3 -15.6
 MET-319   THR-320  21.9 22.0 18.0 -9.9 107.8 111.9 -56.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-332   ALA-333  11.4 11.6 8.7 -15.7 103.0 98.7 -13.2
 ALA-333   LEU-334  9.6 9.7 -8.0 3.2 19.7 16.2 100.8
 LEU-334   LEU-335  11.1 11.1 -1.3 -4.6 67.4 63.8 65.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-358   ILE-359  18.0 17.9 5.0 5.0 46.1 51.3 104.5
 ILE-359   PHE-360  14.7 14.5 -10.7 -2.0 66.0 67.1 68.2
 PHE-360   LEU-361  13.9 14.0 1.0 8.2 82.7 79.5 -63.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-365   LYS-366  8.4 8.1 -4.9 4.2 60.4 64.7 45.7
 LYS-366   GLN-367  11.2 11.0 -5.9 2.4 123.9 124.0 -61.0
 GLN-367   ILE-368  13.6 13.5 7.4 6.1 42.3 42.2 151.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-439   PRO-440  6.8 6.9 -7.0 6.2 72.3 75.3 -27.0
 PRO-440   LEU-441  3.8 4.1 3.0 -9.2 146.9 147.3 113.2
 LEU-441   ILE-442  4.3 4.2 -12.9 20.7 101.6 97.8 -81.6
 ILE-442   ALA-443  5.8 5.8 -3.9 9.6 53.8 60.2 -39.3
 ILE-442   ALA-443  5.8 5.8 -3.9 9.6 53.8 60.2 -39.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-442   ALA-443  5.8 5.8 -3.9 9.6 53.8 60.2 -39.3
 ILE-442   ALA-443  5.8 5.8 -3.9 9.6 53.8 60.2 -39.3
 ALA-443   GLU-444  3.6 3.4 -13.1 6.6 126.1 127.0 -64.0
 GLU-444   HIS-445  1.9 1.8 3.6 8.1 58.3 57.2 104.7
 HIS-445   GLN-446  5.0 4.7 -4.8 1.4 127.6 120.7 -6.1
 HIS-445   GLN-446  5.0 4.7 -4.8 1.4 127.6 120.7 -6.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-445   GLN-446  5.0 4.7 -4.8 1.4 127.6 120.7 -6.1
 HIS-445   GLN-446  5.0 4.7 -4.8 1.4 127.6 120.7 -6.1
 GLN-446   ALA-447  7.2 7.2 0.0 12.6 106.1 99.2 -13.4
 ALA-447   ARG-448  6.6 6.4 -4.9 -12.6 39.8 41.2 215.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees