DNA Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-730   GLU-731  25.1 25.1 -157.6 128.6 71.6 71.9 -2.5
 GLU-731   THR-732  22.2 23.0 18.6 -14.3 47.7 51.8 43.1
 THR-732   GLN-733  21.4 21.2 -154.7 178.0 73.4 91.4 -69.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-738   LYS-739  13.9 13.2 -9.3 7.7 25.8 32.5 24.9
 LYS-739   ALA-740  15.7 15.6 -4.4 -13.4 56.7 43.7 109.7
 ALA-740   VAL-741  12.3 12.9 45.8 -39.8 82.3 78.2 -39.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-765   GLU-766  11.5 11.4 -13.9 13.4 118.9 104.7 -1.9
 GLU-766   PHE-767  9.3 9.0 -59.8 40.4 56.6 43.0 118.7
 PHE-767   GLU-768  8.5 8.9 3.1 -7.0 126.0 135.7 7.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-867   TYR-868  1.6 1.1 -22.0 10.4 46.7 43.0 89.1
 TYR-868   THR-869  2.8 2.6 -22.5 19.7 97.5 97.0 41.2
 THR-869   VAL-870  6.3 5.8 21.5 -23.1 49.7 50.1 3.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees